About: Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan

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About: Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan
Creator	Akashi, H Kato, K Numazawa, D Ogawa, Y Tohya, Y Yin, Y
Source	Medline; PMC
abstract	Enteric caliciviruses, noroviruses, and sapoviruses are emerging path- ogens responsible for diarrhea or gastroenteritis in their respective hosts. In this study, swine enteric caliciviruses were detected in ten samples of intestinal contents from 24 piglets in Japan by reverse transcription-polymerase chain reaction using a broadly reactive primer pair (P290/289) that targeted the highly conserved RNA polymerase regions of the enteric caliciviruses. From the positive samples, the entire viral genome of strain K7/JP and 3′-end parts of the genomes of strains K5/JP and K10/JP were cloned and sequenced. K7/JP had an RNA genome of 7144 bases, excluding its 3′ poly (A) tail. The K7/JP genome possessed two open reading frames and characteristics common to sapoviruses. In phylogenetic analysis using amino acid sequences of VP1, K5/JP was demonstrated to be close to the noroviruses previously detected in pigs, and K7/JP and K10/JP were considered to be classified as a new genogroup of sapoviruses.
has issue date	2006-03-30(xsd:dateTime)
bibo:doi	10.1007/s00705-006-0750-y
bibo:pmid	16575478
has license	no-cc
sha1sum (hex)	0ccd121d624ff4fee006193fc22a6ff9ea08634a
schema:url	https://doi.org/10.1007/s00705-006-0750-y
resource representing a document's title	Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan
has PubMed Central identifier	PMC7087045
has PubMed identifier	16575478
schema:publication	Arch Virol
resource representing a document's body	covid:0ccd121d624ff4fee006193fc22a6ff9ea08634a#body_text
is schema:about of	named entity 'parts' named entity 'broadly' named entity 'possessed' named entity 'POSITIVE' named entity 'REGIONS' named entity 'DEMONSTRATED' named entity 'CLOSE TO' named entity 'SAPOVIRUSES' named entity 'STRAINS' named entity 'VIRAL GENOME' named entity 'ITS' named entity 'DIARRHEA' named entity 'HOSTS' named entity 'END' named entity 'ENTIRE' named entity 'POLYMERASE CHAIN REACTION' named entity 'PRIMER' named entity 'CALICIVIRUS' named entity 'JAPAN' named entity 'VP1' named entity 'CONSERVED' named entity 'JAPAN' named entity 'INTESTINAL CONTENTS' named entity 'PARTS' named entity 'COMMON' named entity 'GENETIC ANALYSIS' named entity 'DETECTED' named entity 'GENOMES' named entity 'INTESTINAL CONTENTS' named entity 'SWINE' named entity '28A' named entity 'STRAIN' named entity 'HIGHLY' named entity 'REVERSE TRANSCRIPTION' named entity 'RESPONSIBLE' named entity 'PIGS' named entity 'RNA POLYMERASE' named entity 'STUDY' named entity 'PATHOGENS' named entity 'USING' named entity 'CLONED' named entity 'PREVIOUSLY' named entity 'K10' named entity 'DETECTED' named entity 'POSSESSED' named entity 'SAMPLES' named entity 'REACTIVE' named entity 'CALICIVIRUSES' named entity 'ENTERIC' named entity 'BASES' named entity 'AMINO ACID SEQUENCES' named entity 'CHARACTERISTICS' named entity 'TARGETED' named entity 'THEIR' named entity 'CLASSIFIED' named entity 'GENOMES' named entity 'NOROVIRUSES' named entity 'CONSIDERED' named entity 'PAIR' named entity 'NEW' named entity 'POLY' named entity '7144' named entity 'TAIL' named entity 'GASTROENTERITIS' named entity 'OPEN READING FRAMES' named entity 'PHYLOGENETIC ANALYSIS' named entity 'GENOME' named entity 'gastroenteritis' named entity 'contents' named entity 'K10' named entity 'demonstrated' named entity 'detected' named entity 'study' named entity 'Genetic analysis' named entity 'caliciviruses' named entity 'swine'

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