About: Respiratory virus surveillance in hospitalised pneumonia patients on the Thailand-Myanmar border

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Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Respiratory virus surveillance in hospitalised pneumonia patients on the Thailand-Myanmar border
Creator	Turner, Paul Turner, Claudia Watthanaworawit, Wanitda Nosten, Francois Carrara, Verena Cicelia, Naw Deglise, Carole Ortega, Luis Phares, Christina
topic	covid:2a79ac3a49714d75cfc75c28df0a4e33d9362969#this
source	Medline; PMC
abstract	BACKGROUND: Pneumonia is a significant cause of morbidity and mortality in the developing world. Viruses contribute significantly to pneumonia burden, although data for low-income and tropical countries are scarce. The aim of this laboratory-enhanced, hospital-based surveillance was to characterise the epidemiology of respiratory virus infections among refugees living on the Thailand-Myanmar border. METHODS: Maela camp provides shelter for ~45,000 refugees. Inside the camp, a humanitarian organisation provides free hospital care in a 158-bed inpatient department (IPD). Between 1st April 2009 and 30th September 2011, all patients admitted to the IPD with a clinical diagnosis of pneumonia were invited to participate. Clinical symptoms and signs were recorded and a nasopharyngeal aspirate (NPA) collected. NPAs were tested for adenoviruses, human metapneumovirus (hMPV), influenza A & B, and RSV by PCR. RESULTS: Seven hundred eight patient episodes (698 patients) diagnosed as pneumonia during the enhanced surveillance period were included in this analysis. The median patient age was 1 year (range: < 1-70), and 90.4% were aged < 5 years. At least one virus was detected in 53.7% (380/708) of episodes. Virus detection was more common in children aged < 5 years old (<1 year: OR 2.0, 95% CI 1.2-3.4, p = 0.01; 1-4 years: OR 1.4, 95% CI 0.8-2.3, p = 0.2). RSV was detected in 176/708 (24.9%); an adenovirus in 133/708 (18.8%); an influenza virus in 68/708 (9.6%); and hMPV in 33/708 (4.7%). Twenty-eight episodes of multiple viral infections were identified, most commonly adenovirus plus another virus. RSV was more likely to be detected in children <5 years (OR 12.3, 95% CI 3.0-50.8, p = 0.001) and influenza viruses in patients ≥5 years (OR 2.8, 95% CI 1.5-5.4, p = 0.002). IPD treatment was documented in 702/708 cases; all but one patient received antimicrobials, most commonly a beta-lactam (amoxicillin/ampicillin +/−gentamicin in 664/701, 94.7%). CONCLUSIONS: Viral nucleic acid was identified in the nasopharynx in half the patients admitted with clinically diagnosed pneumonia. Development of immunisations targeting common respiratory viruses is likely to reduce the incidence of pneumonia in children living refugee camps and similar settings.
has issue date	2013-09-16(xsd:dateTime)
bibo:doi	10.1186/1471-2334-13-434
bibo:pmid	24498873
has license	cc-by
sha1sum (hex)	2a79ac3a49714d75cfc75c28df0a4e33d9362969
schema:url	https://doi.org/10.1186/1471-2334-13-434
resource representing a document's title	Respiratory virus surveillance in hospitalised pneumonia patients on the Thailand-Myanmar border
has PubMed Central identifier	PMC3847692
has PubMed identifier	24498873
schema:publication	BMC Infect Dis
resource representing a document's body	covid:2a79ac3a49714d75cfc75c28df0a4e33d9362969#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/2a79ac3a49714d75cfc75c28df0a4e33d9362969
is schema:about of	named entity '95% CI' named entity 'patients' named entity 'viral infections' named entity 'aged' named entity '95% CI' named entity 'NPAs' named entity 'incidence' named entity 'border' named entity '702' named entity 'enhanced' named entity 'invited' named entity 'range' named entity 'border' covid:arg/2a79ac3a49714d75cfc75c28df0a4e33d9362969 named entity '2011' named entity 'DOCUMENTED' named entity 'REFUGEE CAMPS' named entity 'BED' named entity 'CHILDREN' named entity 'IPD' named entity '3.4' named entity 'MULTIPLE' named entity 'DETECTED' named entity 'TROPICAL' named entity '0.8' named entity 'DEVELOPING' named entity 'OLD' named entity '2-3' named entity '12.3' named entity 'INCLUDED' named entity 'PNEUMONIA' named entity 'SEPTEMBER' named entity 'SHELTER' named entity 'MYANMAR' named entity 'IDENTIFIED' named entity 'LABORATORY' named entity 'BACKGROUND' named entity 'SIMILAR' named entity '2818' named entity 'PCR' named entity 'RECORDED' named entity 'ENHANCED' named entity 'ORGANISATION' named entity 'INFECTIONS' named entity 'A55' named entity 'INCIDENCE' named entity 'IS A' named entity '158' named entity 'BURDEN' named entity 'PATIENT' named entity 'CAUSE' named entity 'ADENOVIRUS' named entity 'CONCLUSIONS' named entity 'CLINICAL DIAGNOSIS' named entity 'CHILDREN LIVING' named entity 'REFUGEES' named entity 'SEVEN' named entity 'INPATIENT' named entity 'HUMAN METAPNEUMOVIRUS' named entity 'TO REDUCE' named entity 'DEVELOPMENT' named entity 'VIRUS DETECTION' named entity '28698' named entity 'LOW' named entity 'COUNTRIES' named entity '1.5' named entity 'INCOME' named entity 'PROVIDES' named entity 'THAILAND' named entity 'SETTINGS' named entity 'DATA'

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