About: PATRIC: The VBI PathoSystems Resource Integration Center

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	PATRIC: The VBI PathoSystems Resource Integration Center
Creator	Baker, S Crasta, O Guo, Y Kenyon, R Lu, J Meng, X Nguyen, V Sobral, B Will, R Xue, T Yu, G Zhang, F Azad, A Boyle, S Czar, M Dharmanolla, C Dickerman, A Dongre, N Eckart, J Gabbard, J Gillespie, J Hamelius, J Hance, M Hix, D Huntington, K Jukneliene, D Kampanya, N Karur, H Khudyakov, Y Koziski, J Mackasmiel, L Mane, S Nordberg, E Purkayastha, A Rupprecht, C Setubal, J Shallom, J Shukla, M Snyder, E Soneja, J Tian, Y Yoo, H Vinje, J
source	Medline; PMC
abstract	The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a data and analysis resource for selected NIAID priority pathogens, specifically proteobacteria of the genera Brucella, Rickettsia and Coxiella, and corona-, calici- and lyssaviruses and viruses associated with hepatitis A and E. The goal of the project is to provide a comprehensive bioinformatics resource for these pathogens, including consistently annotated genome, proteome and metabolic pathway data to facilitate research into counter-measures, including drugs, vaccines and diagnostics. The project's curation strategy has three prongs: ‘breadth first’ beginning with whole-genome and proteome curation using standardized protocols, a ‘targeted’ approach addressing the specific needs of researchers and an integrative strategy to leverage high-throughput experimental data (e.g. microarrays, proteomics) and literature. The PATRIC infrastructure consists of a relational database, analytical pipelines and a website which supports browsing, querying, data visualization and the ability to download raw and curated data in standard formats. At present, the site warehouses complete sequences for 17 bacterial and 332 viral genomes. The PATRIC website () will continually grow with the addition of data, analysis and functionality over the course of the project.
has issue date	2006-11-16(xsd:dateTime)
bibo:doi	10.1093/nar/gkl858
bibo:pmid	17142235
has license	cc-by-nc
sha1sum (hex)	2cf60380bb05becd140053f71fa4cc4e4eaa0d5f
schema:url	https://doi.org/10.1093/nar/gkl858
resource representing a document's title	PATRIC: The VBI PathoSystems Resource Integration Center
has PubMed Central identifier	PMC1669763
has PubMed identifier	17142235
schema:publication	Nucleic Acids Res
resource representing a document's body	covid:2cf60380bb05becd140053f71fa4cc4e4eaa0d5f#body_text
is schema:about of	named entity 'BACTERIAL' named entity 'COMPREHENSIVE' named entity 'LITERATURE' named entity 'FUNDED' named entity 'RESOURCE' named entity 'CURATION' named entity 'SPECIFIC' named entity 'VACCINES' named entity 'COUNTER' named entity 'DISEASES' named entity 'RELATIONAL DATABASE' named entity 'EXPERIMENTAL DATA' named entity 'MEASURES' named entity 'STRATEGY' named entity 'COXIELLA' named entity 'NATIONAL' named entity 'RICKETTSIA' named entity 'INTEGRATION' named entity '332' named entity 'FORMATS' named entity 'BRUCELLA' named entity 'DATA' named entity 'FUNCTIONALITY' named entity 'HIGH' named entity '27S' named entity 'ADDRESSING' named entity 'PROTOCOLS' named entity 'DIAGNOSTICS' named entity 'NEEDS' named entity 'Coxiella' named entity 'Diseases' named entity 'sequences' named entity 'The goal' named entity 'bacterial' named entity 'data' named entity 'literature' named entity 'project' named entity 'GROW' named entity 'ONE OF'

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