About: Reorganization and expansion of the nidoviral family Arteriviridae

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Reorganization and expansion of the nidoviral family Arteriviridae Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Reorganization and expansion of the nidoviral family Arteriviridae
Creator	Palacios, Gustavo Lauck, Michael Wada, Jiro Delwart, Eric Postnikova, Elena Dunowska, Magdalena Bollinger, Laura Rogers, Jeffrey Fei, · Jahrling, B Kuhn, Jens Ng, Fan Goldberg, Tony Lackemeyer, Matthew Thomas, · David, · Tamoufe, Ubald Le, Joseph Peter, · Adam, · Alexey, · Alkhovsky, V Bailey, L Bradley, · Bào, Yīmíng Clawson, Anna Coffey, L Deriabin, Petr Diffo, Doux Friedrich, C Gillis, Amethyst Jean, · Kondov, O Lapin, Boris Lark, · Lebreton, · Nathan, · Nikola, · O'connor, H Radoshitzky, R Schneider, S Sergey, · Shchetinin, M Sheli, · Shevtsova, V Takuo, Michel Vishnevskaya, Tatyana Wolfe, D Zinaida, ·
Source	Medline; PMC
abstract	The family Arteriviridae presently includes a single genus Arterivirus. This genus includes four species as the taxonomic homes for equine arteritis virus (EAV), lactate dehydrogenase-elevating virus (LDV), porcine respiratory and reproductive syndrome virus (PRRSV), and simian hemorrhagic fever virus (SHFV), respectively. A revision of this classification is urgently needed to accommodate the recent description of eleven highly divergent simian arteriviruses in diverse African nonhuman primates, one novel arterivirus in an African forest giant pouched rat, and a novel arterivirus in common brushtails in New Zealand. In addition, the current arterivirus nomenclature is not in accordance with the most recent version of the International Code of Virus Classification and Nomenclature. Here we outline an updated, amended, and improved arterivirus taxonomy based on current data. Taxon-specific sequence cut-offs are established relying on a newly established open reading frame 1b phylogeny and pairwise sequence comparison (PASC) of coding-complete arterivirus genomes. As a result, the current genus Arterivirus is replaced by five genera: Equartevirus (for EAV), Rodartevirus (LDV + PRRSV), Simartevirus (SHFV + simian arteriviruses), Nesartevirus (for the arterivirus from forest giant pouched rats), and Dipartevirus (common brushtail arterivirus). The current species Porcine reproductive and respiratory syndrome virus is divided into two species to accommodate the clear divergence of the European and American “types” of PRRSV, both of which now receive virus status. The current species Simian hemorrhagic fever virus is divided into nine species to accommodate the twelve known simian arteriviruses. Non-Latinized binomial species names are introduced to replace all current species names to clearly differentiate them from virus names, which remain largely unchanged.
has issue date	2015-11-25(xsd:dateTime)
bibo:doi	10.1007/s00705-015-2672-z
bibo:pmid	26608064
has license	no-cc
sha1sum (hex)	9a46eb139219bd8d89d8b655c9caec208bb099e3
schema:url	https://doi.org/10.1007/s00705-015-2672-z
resource representing a document's title	Reorganization and expansion of the nidoviral family Arteriviridae
has PubMed Central identifier	PMC5573231
has PubMed identifier	26608064
schema:publication	Arch Virol
resource representing a document's body	covid:9a46eb139219bd8d89d8b655c9caec208bb099e3#body_text
is schema:about of	named entity 'RECENT' named entity 'EAV' named entity 'KRCV' named entity 'baboons' named entity 'EAV' named entity 'Neighbor-Joining method' named entity 'Equid' named entity 'vervet monkeys' named entity 'virus' named entity 'arterivirus' named entity 'amino acid sequences' named entity 'EAV' named entity 'genomes' named entity 'genus' named entity 'arterivirus' named entity 'Togaviridae' named entity 'Alamogordo' named entity 'phylogenetic analysis' named entity 'taxonomic' named entity 'MAFFT' named entity 'genus' named entity 'ICNV' named entity 'Mikumi National Park' named entity 'arterivirus' named entity 'viruses' named entity 'Mammalia' named entity 'Procolobus' named entity 'viruses' named entity 'baboon' named entity 'genome' named entity 'Cercopithecus neglectus' named entity 'nonhuman primates' named entity 'SHFV'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software