About: Coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in Viet Nam, 2013-2014

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in Viet Nam, 2013-2014
Creator	Jin, Dong-Yan Goldstein, Tracey Tung, Nguyen Gilbert, Martin Joly, Damien Mazet, Jonna Roberton, Scott Fine, Amanda Johnson, Christine Lan, Nguyen Nguyen, Thi Phuong, Nguyen Diep, Nguyen Long, Nguyen Bich, Hoang Duc Luu, Bach Hoa, Nguyen Ontiveros, Victoria Quang Minh, Phan Quang, Vinh Quynh, Nguyen Tin, Le Van Hung, Vo Wicker, Leanne Dang Ky, Van Latinne, Alice Olsonid, Sarah Pruvotid, Mathieu Thanh, Nga Tremeau-Bravard, Alex Van Long, Walzerid, Chris
topic	covid:ce4420db4bd8c01a705acf5ca1821dc76eaed3f9#this
source	Medline; PMC
abstract	Outbreaks of emerging coronaviruses in the past two decades and the current pandemic of a novel coronavirus (SARS-CoV-2) that emerged in China highlight the importance of this viral family as a zoonotic public health threat. To gain a better understanding of coronavirus presence and diversity in wildlife at wildlife-human interfaces in three southern provinces in Viet Nam 2013–2014, we used consensus Polymerase Chain Reactions to detect coronavirus sequences. In comparison to previous studies, we observed high proportions of positive samples among field rats (34.0%, 239/702) destined for human consumption and insectivorous bats in guano farms (74.8%, 234/313) adjacent to human dwellings. Most notably among field rats, the odds of coronavirus RNA detection significantly increased along the supply chain from field rats sold by traders (reference group; 20.7% positivity, 39/188) by a factor of 2.2 for field rats sold in large markets (32.0%, 116/363) and 10.0 for field rats sold and served in restaurants (55.6%, 84/151). Coronaviruses were also detected in rodents on the majority of wildlife farms sampled (60.7%, 17/28). These coronaviruses were found in the Malayan porcupines (6.0%, 20/331) and bamboo rats (6.3%, 6/96) that are raised on wildlife farms for human consumption as food. We identified six known coronaviruses in bats and rodents, clustered in three Coronaviridae genera, including the Alpha-, Beta-, and Gammacoronaviruses. Our analysis also suggested either mixing of animal excreta in the environment or interspecies transmission of coronaviruses, as both bat and avian coronaviruses were detected in rodent feces on wildlife farms. The mixing of multiple coronaviruses, and their apparent amplification along the wildlife supply chain into restaurants, suggests maximal risk for end consumers and likely underpins the mechanisms of zoonotic spillover to people.
has issue date	2020-08-10(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0237129
bibo:pmid	32776964
has license	cc-by
sha1sum (hex)	ce4420db4bd8c01a705acf5ca1821dc76eaed3f9
schema:url	https://doi.org/10.1371/journal.pone.0237129
resource representing a document's title	Coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in Viet Nam, 2013-2014
has PubMed Central identifier	PMC7416947
has PubMed identifier	32776964
schema:publication	PLoS One
resource representing a document's body	covid:ce4420db4bd8c01a705acf5ca1821dc76eaed3f9#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/ce4420db4bd8c01a705acf5ca1821dc76eaed3f9
is schema:about of	named entity 'wildlife' named entity 'viral' named entity 'destined' named entity 'Viet Nam' covid:arg/ce4420db4bd8c01a705acf5ca1821dc76eaed3f9 named entity 'sequences' named entity 'public health' named entity 'Most' named entity '2013' named entity 'Reactions' named entity 'Polymerase' named entity 'studies' named entity 'human' named entity 'rodents' named entity 'samples' named entity 'coronaviruses' named entity 'rats' named entity 'SARS-CoV-2' named entity 'wildlife' named entity 'coronavirus' named entity 'emerged' named entity 'field rats' named entity 'rodents' named entity 'field rats' named entity 'Coronaviruses' named entity 'bamboo' named entity 'RNA' named entity 'reference group' named entity 'coronavirus' named entity 'China' named entity '2.2' named entity 'coronaviruses' named entity 'coronavirus' named entity 'coronavirus' named entity 'Viet Nam' named entity 'majority' named entity 'markets' named entity 'guano' named entity 'supply chain' named entity 'field rats' named entity 'SARS-CoV-2' named entity 'porcupines' named entity 'public health' named entity 'coronaviruses' named entity 'Polymerase Chain Reactions' named entity 'coronaviruses' named entity 'China' named entity 'zoonotic'

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