About: Origin and Evolution of the Kiwifruit Canker Pandemic

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Origin and Evolution of the Kiwifruit Canker Pandemic
Creator	Pan, Hui Li, Li Li, Dawei Liu, Yifei Colombi, Elena Huang, Hongwen Straub, Christina Zhong, Caihong Mccann, Honour Rainey, Paul Rikkerink, Erik Templeton, Matthew
source	Medline; PMC
abstract	Recurring epidemics of kiwifruit (Actinidia spp.) bleeding canker disease are caused by Pseudomonas syringae pv. actinidiae (Psa). In order to strengthen understanding of population structure, phylogeography, and evolutionary dynamics, we isolated Pseudomonas from cultivated and wild kiwifruit across six provinces in China. Based on the analysis of 80 sequenced Psa genomes, we show that China is the origin of the pandemic lineage but that strain diversity in China is confined to just a single clade. In contrast, Korea and Japan harbor strains from multiple clades. Distinct independent transmission events marked introduction of the pandemic lineage into New Zealand, Chile, Europe, Korea, and Japan. Despite high similarity within the core genome and minimal impact of within-clade recombination, we observed extensive variation even within the single clade from which the global pandemic arose.
has issue date	2017-04-01(xsd:dateTime)
bibo:doi	10.1093/gbe/evx055
bibo:pmid	28369338
has license	cc-by-nc
sha1sum (hex)	d5957419c56ec4aaf3fc7702330f84b0d5951cc1
schema:url	https://doi.org/10.1093/gbe/evx055
resource representing a document's title	Origin and Evolution of the Kiwifruit Canker Pandemic
has PubMed Central identifier	PMC5388287
has PubMed identifier	28369338
schema:publication	Genome Biol Evol
resource representing a document's body	covid:d5957419c56ec4aaf3fc7702330f84b0d5951cc1#body_text
is schema:about of	named entity 'EVOLUTION' named entity 'events' named entity 'New Zealand' named entity 'observed' named entity 'Evolution' covid:arg/d5957419c56ec4aaf3fc7702330f84b0d5951cc1 named entity 'KIWIFRUIT' named entity 'HIGH' named entity 'STRAIN' named entity 'POPULATION STRUCTURE' named entity 'PSEUDOMONAS SYRINGAE' named entity 'EVENTS' named entity 'EUROPE' named entity 'GLOBAL' named entity 'OBSERVED' named entity 'EPIDEMICS' named entity 'DISTINCT' named entity 'INTRODUCTION' named entity 'NEW ZEALAND' named entity 'INDEPENDENT' named entity 'PANDEMIC' named entity 'SINGLE' named entity 'STRAINS' named entity 'TRANSMISSION' named entity 'MARKED' named entity 'SPP' named entity 'CANKER' named entity 'ORIGIN' named entity 'ANALYSIS' named entity 'VARIATION' named entity 'PANDEMIC' named entity 'MULTIPLE' named entity 'WILD' named entity 'ISOLATED' named entity 'PSA' named entity 'SIMILARITY' named entity 'CONTRAST' named entity 'CHILE' named entity 'ORIGIN' named entity 'DIVERSITY' named entity 'CORE' named entity 'JAPAN' named entity 'MINIMAL' named entity 'PSEUDOMONAS' named entity 'UNDERSTANDING' named entity 'BASED' named entity 'CHINA' named entity 'LINEAGE' named entity 'IMPACT' named entity 'KOREA' named entity 'KIWIFRUIT' named entity 'CAUSED BY' named entity 'BUT' named entity 'DISEASE' named entity 'ACROSS' named entity 'JUST' named entity 'GENOMES' named entity 'ORDER' named entity 'RECOMBINATION' named entity 'CANKER' named entity 'HARBOR' named entity 'RECURRING' named entity 'EVOLUTIONARY DYNAMICS' named entity 'EXTENSIVE' named entity 'CLADE' named entity 'GENOME' named entity 'BLEEDING' named entity 'PHYLOGEOGRAPHY' named entity 'Korea' named entity 'strains'

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