About: STEM: An Open Source Tool for Disease Modeling

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	STEM: An Open Source Tool for Disease Modeling
Creator	Bianco, Simone Engelhardt, Tekla Filter, Matthias Günther, Taras Swaid, Ahmad Douglas, Judith Hu, Maggie Kaufman, James Nixon, Emily Sevilla, Nereyda
source	Medline; PMC
abstract	The Spatiotemporal Epidemiologic Modeler (STEM) is an open source software project supported by the Eclipse Foundation and used by a global community of researchers and public health officials working to track and, when possible, control outbreaks of infectious disease in human and animal populations. STEM is not a model or a tool designed for a specific disease; it is a flexible, modular framework supporting exchange and integration of community models, reusable plug-in components, and denominator data, available to researchers worldwide at www.eclipse.org/stem. A review of multiple projects illustrates its capabilities. STEM has been used to study variations in transmission of seasonal influenza in Israel by strains; evaluate social distancing measures taken to curb the H1N1 epidemic in Mexico City; study measles outbreaks in part of London and inform local policy on immunization; and gain insights into H7N9 avian influenza transmission in China. A multistrain dengue fever model explored the roles of the mosquito vector, cross-strain immunity, and antibody response in the frequency of dengue outbreaks. STEM has also been used to study the impact of variations in climate on malaria incidence. During the Ebola epidemic, a weekly conference call supported the global modeling community; subsequent work modeled the impact of behavioral change and tested disease reintroduction via animal reservoirs. Work in Germany tracked salmonella in pork from farm to fork; and a recent doctoral dissertation used the air travel feature to compare the potential threats posed by weaponizing infectious diseases. Current projects include work in Great Britain to evaluate control strategies for parasitic disease in sheep, and in Germany and Hungary, to validate the model and inform policy decisions for African swine fever. STEM Version 4.0.0, released in early 2019, includes tools used in these projects and updates technical aspects of the framework to ease its use and re-use.
has issue date	2019-08-01(xsd:dateTime)
bibo:doi	10.1089/hs.2019.0018
bibo:pmid	31433284
has license	cc-by
sha1sum (hex)	d7788ab137f05cf1c247c60dbe388b80fb5764a7
schema:url	https://doi.org/10.1089/hs.2019.0018
resource representing a document's title	STEM: An Open Source Tool for Disease Modeling
has PubMed Central identifier	PMC6708268
has PubMed identifier	31433284
schema:publication	Health Secur
resource representing a document's body	covid:d7788ab137f05cf1c247c60dbe388b80fb5764a7#body_text
is schema:about of	named entity 'DISEASE OUTBREAKS' named entity 'outbreaks' named entity 'immunization' named entity 'inform' named entity 'populations' named entity 'measles' named entity 'Open Source' named entity 'Temporal' named entity 'INFECTIOUS DISEASE' named entity 'ECLIPSE' named entity 'DATA' named entity 'H1N1' named entity 'PUBLIC HEALTH' named entity 'MEASLES' named entity 'SPECIFIC' named entity 'EXCHANGE' named entity 'PART OF' named entity 'ITS' named entity 'GLOBAL' named entity 'TAKEN' named entity 'POLICY' named entity 'STUDY' named entity 'FLEXIBLE' named entity 'OPEN SOURCE SOFTWARE' named entity 'REUSABLE' named entity 'INTEGRATION' named entity 'LONDON' named entity 'WORKING' named entity 'OUTBREAKS' named entity 'FOUNDATION' named entity 'MODEL' named entity 'SUPPORTED' named entity 'WORLDWIDE' named entity 'STRAINS' named entity 'INFECTIOUS DISEASE' named entity 'VARIATIONS' named entity 'STEM' named entity 'EPIDEMIC' named entity 'DENOMINATOR' named entity 'REVIEW OF' named entity 'PLUG' named entity 'MODELS' named entity 'ORG' named entity 'ISRAEL' named entity 'DISEASE' named entity 'TO TRACK' named entity 'TOOL' named entity 'MODELING' named entity 'OPEN' named entity 'SOURCE' named entity 'ANALYSIS' named entity 'EVALUATE' named entity 'SUPPORTING' named entity 'TRANSMISSION' named entity 'MEXICO CITY' named entity 'MEASURES' named entity 'CURB' named entity 'PROJECT' named entity 'COMPONENTS' named entity 'ANIMAL' named entity 'SEASONAL INFLUENZA' named entity 'POSSIBLE' named entity 'USED BY' named entity 'MULTIPLE' named entity 'IMMUNIZATION' named entity 'HUMAN' named entity 'WWW' named entity 'CONTROL' named entity 'DISEASE' named entity 'SPATIAL' named entity 'IS A' named entity 'POPULATIONS'

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