About: Genetic Characteristics of Coronaviruses from Korean Bats in 2016

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Genetic Characteristics of Coronaviruses from Korean Bats in 2016
Creator	Oem, Jae-Ku An, Injung Jeong, Jipseol Jheong, Weonhwa Kim, Yongkwan Lee, Saemi Seong-Deok, & Son, Kidong Wang, Seung-Jun
source	Medline; PMC
abstract	Bats have increasingly been recognized as the natural reservoir of severe acute respiratory syndrome (SARS), coronavirus, and other coronaviruses found in mammals. However, little research has been conducted on bat coronaviruses in South Korea. In this study, bat samples (332 oral swabs, 245 fecal samples, 38 urine samples, and 57 bat carcasses) were collected at 33 natural bat habitat sites in South Korea. RT-PCR and sequencing were performed for specific coronavirus genes to identify the bat coronaviruses in different bat samples. Coronaviruses were detected in 2.7% (18/672) of the samples: 13 oral swabs from one species of the family Rhinolophidae, and four fecal samples and one carcass (intestine) from three species of the family Vespertiliodae. To determine the genetic relationships of the 18 sequences obtained in this study and previously known coronaviruses, the nucleotide sequences of a 392-nt region of the RNA-dependent RNA polymerase (RdRp) gene were analyzed phylogenetically. Thirteen sequences belonging to SARS-like betacoronaviruses showed the highest nucleotide identity (97.1–99.7%) with Bat-CoV-JTMC15 reported in China. The other five sequences were most similar to MERS-like betacoronaviruses. Four nucleotide sequences displayed the highest identity (94.1–95.1%) with Bat-CoV-HKU5 from Hong Kong. The one sequence from a carcass showed the highest nucleotide identity (99%) with Bat-CoV-SC2013 from China. These results suggest that careful surveillance of coronaviruses from bats should be continued, because animal and human infections may result from the genetic variants present in bat coronavirus reservoirs.
has issue date	2017-07-19(xsd:dateTime)
bibo:doi	10.1007/s00248-017-1033-8
bibo:pmid	28725945
has license	no-cc
sha1sum (hex)	fbf86a73100227664edcdc981bbbccb9782602eb
schema:url	https://doi.org/10.1007/s00248-017-1033-8
resource representing a document's title	Genetic Characteristics of Coronaviruses from Korean Bats in 2016
has PubMed Central identifier	PMC7079938
has PubMed identifier	28725945
schema:publication	Microb Ecol
resource representing a document's body	covid:fbf86a73100227664edcdc981bbbccb9782602eb#body_text
is schema:about of	named entity 'identity' named entity 'severe acute respiratory syndrome (SARS)' named entity 'surveillance' named entity 'coronaviruses' named entity 'sequences' named entity 'CHINA' named entity 'SOUTH KOREA' named entity 'RT-PCR' named entity 'MERS' named entity 'OBTAINED' named entity 'HONG KONG' named entity 'SEQUENCING' named entity 'SIMILAR' named entity 'SITES' named entity 'LITTLE' named entity 'GENES' named entity 'NUCLEOTIDE SEQUENCES' named entity 'TO IDENTIFY' named entity 'RESULT' named entity 'SURVEILLANCE' named entity 'DETECTED' named entity 'THESE' named entity 'GENETIC' named entity '2.7' covid:arg/fbf86a73100227664edcdc981bbbccb9782602eb named entity 'RESEARCH' named entity 'GENETIC' named entity 'NATURAL' named entity 'PREVIOUSLY' named entity 'HAVE' named entity 'BATS' named entity 'CORONAVIRUSES' named entity 'KOREAN' named entity 'SEVERE ACUTE RESPIRATORY SYNDROME' named entity '245' named entity 'CARCASS' named entity 'BELONGING' named entity 'IDENTITY' named entity '2899' named entity 'SEQUENCE' named entity 'HIGHEST' named entity 'STUDY' named entity '392' named entity 'REGION' named entity 'VARIANTS' named entity 'GENE' named entity 'CHARACTERISTICS' named entity 'ANALYZED' named entity 'RESERVOIR' named entity 'ORAL' named entity 'PERFORMED' named entity 'FAMILY RHINOLOPHIDAE' named entity 'CORONAVIRUSES' named entity 'RNA POLYMERASE' named entity 'CONTINUED' named entity 'NUCLEOTIDE' named entity 'KNOWN' named entity 'SUGGEST' named entity 'RESULTS' named entity 'SPECIFIC' named entity 'DISPLAYED' named entity 'CORONAVIRUS' named entity '28332' named entity 'FAMILY' named entity 'RELATIONSHIPS' named entity 'LIKE' named entity 'SAMPLES' named entity 'FOUND' named entity 'HABITAT' named entity 'MAMMALS' named entity 'PRESENT' named entity '2818' named entity 'SWABS'

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