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The Gene Ontology (GO) is typically used, the input is a set of Gene IDs, and the output of the analysis is typically a ranked list of GO concepts, each associated with a p-value.

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  • Gene-set enrichment analysis
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  • The Gene Ontology (GO) is typically used, the input is a set of Gene IDs, and the output of the analysis is typically a ranked list of GO concepts, each associated with a p-value.
  • Analyse gene expression patterns to identify sets of genes that are associated with a specific trait, condition, clinical outcome etc.
  • "Gene set analysis" (often used interchangeably or in an overlapping sense with "gene-set enrichment analysis") refers to the functional analysis (term enrichment) of a differentially expressed set of genes, rather than all genes analysed.
  • Gene sets can be defined beforehand by biological function, chromosome locations and so on.
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