About: Genetic diversity at major histocompatibility complex and its effect on production and immune traits in indigenous chicken breeds of India

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About: Genetic diversity at major histocompatibility complex and its effect on production and immune traits in indigenous chicken breeds of India Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genetic diversity at major histocompatibility complex and its effect on production and immune traits in indigenous chicken breeds of India
Creator	Chatterjee, Rudra Devara, Divya Haunshi, Santosh Ramasamy, Kannaki Ullengala, Rajkumar
Source	Medline; PMC
abstract	The genetic diversity at major histocompatibility complex (MHC) in indigenous chicken breeds of India (Ghagus and Nicobari) in comparison with the White Leghorn (WLH) breed was investigated by genotyping the MHC-linked LEI0258 marker. Altogether 38 alleles and 96 genotypes were observed among three breeds. The observed and effective alleles were highest in Ghagus (23, 8.3) followed by Nicobari (14, 3.2) and WLH (10 and 2.2) breeds. The size of alleles ranged from 193 to 489 bp in Ghagus, 193 to 552 bp in Nicobari and 241 to 565 bp in the WLH breed. The number of private alleles was also highest in Ghagus (18) followed by Nicobari (8) and WLH (5) breeds. The most frequent allele was 261 bp in WLH (66 %), 343 bp in Nicobari (50.4 %) and 309 bp in the Ghagus (28.15 %) breed. Observed and expected heterozygosities were highest in Ghagus (0.83, 0.88) followed by Nicobari (0.58, 0.68) and WLH (0.53, 0.54). The genetic distance (Nei) between Ghagus and Nicobari breeds (2.24) was higher as compared to that of Ghagus and WLH (1.23) and that between Nicobari and WLH breeds (0.89). Association analysis revealed significant influence of MHC alleles on body weight, egg production in Ghagus and WLH breeds and antibody titres to Newcastle disease vaccine in the Nicobari breed.
has issue date	2020-06-16(xsd:dateTime)
bibo:doi	10.5194/aab-63-173-2020
bibo:pmid	32760784
has license	cc-by
sha1sum (hex)	0309736adaaa5aec19a3b5aa253e288c694979ae
schema:url	https://doi.org/10.5194/aab-63-173-2020
resource representing a document's title	Genetic diversity at major histocompatibility complex and its effect on production and immune traits in indigenous chicken breeds of India
has PubMed Central identifier	PMC7397721
has PubMed identifier	32760784
schema:publication	Arch Anim Breed
resource representing a document's body	covid:0309736adaaa5aec19a3b5aa253e288c694979ae#body_text
is schema:about of	named entity 'alleles' named entity 'Genetic diversity' named entity 'body weight' named entity 'investigated' named entity 'genotyping' named entity 'MHC' named entity 'private' named entity 'major histocompatibility complex' named entity 'vaccine' named entity 'Nicobari' named entity 'Nicobari' named entity 'genotyping' named entity 'Nicobari' named entity 'genetic diversity' named entity 'antibody titres' named entity 'Nicobari' named entity 'Nicobari' named entity 'MHC' named entity 'chicken' named entity 'alleles' named entity 'genotypes' named entity 'Newcastle disease' named entity 'PCR' named entity 'allele' named entity 'allele' named entity 'Iran' named entity 'PCR' named entity 'indel' named entity 'NCBI' named entity 'mutation' named entity 'NDV' named entity 'allele' named entity 'chicken' named entity 'genotypes' named entity 'chloroform' named entity 'Yadav' named entity 'Nicobari' named entity 'White Leghorn' named entity 'IL8' named entity 'haplotypes' named entity 'India' named entity 'chicken' named entity 'SNP' named entity 'NDV' named entity 'genomic DNA' named entity 'genotypes' named entity 'Major histocompatibility complex' named entity 'MHC' named entity '20 weeks' named entity 'PCR' named entity 'chicken' named entity 'genetic variability' named entity 'allele' named entity 'lysis buffer' named entity '100 %' named entity 'immune response' named entity 'allele' named entity 'Slow-growing' named entity 'genotypes' named entity 'allele' named entity 'immune competence' named entity 'allele frequency' named entity 'PCR' named entity 'Iran' named entity 'serologically' named entity 'vaccine' named entity 'AMOVA' named entity 'heterozygosity' named entity 'allele frequency' named entity 'allele' named entity '20 weeks' named entity 'Qiagen' named entity 'genotyping' named entity 'vaccine' named entity 'NAb' named entity 'MHC' named entity 'Taq DNA polymerase'

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