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About:
Targeting SARS‐CoV‐2 RBD interface: a supervised computational data‐driven approach to identify potential modulators
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wasabi.inria.fr
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Type:
Academic Article
research paper
schema:ScholarlyArticle
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type
Academic Article
research paper
schema:ScholarlyArticle
isDefinedBy
Covid-on-the-Web dataset
title
Targeting SARS‐CoV‐2 RBD interface: a supervised computational data‐driven approach to identify potential modulators
Creator
De Rosa,
De Rosa, Maria
De Simone, Giada
De Simone, N
Diana,
Diana, Patrizia
Gulotta, M
Gulotta, Maria
Gulotta, ]
Lombino, J
Lombino, Jessica
Mekni, M
Mekni, Nedra
Padova,
Padova, Alessandro
Perricone, G
Perricone, Ugo
source
Medline; PMC
abstract
Coronavirus Disease 2019 (COVID‐19) has spread out as a pandemic threat affecting over 2 million people. The infectious process initiates via binding of SARS‐CoV‐2 Spike (S) glycoprotein to host Angiotensin‐converting enzyme 2 (ACE2). The interaction is mediated by the receptor‐binding domain (RBD) of S glycoprotein, promoting host receptor recognition and binding to ACE2 peptidase domain (PD), thus representing a promising target for therapeutic intervention. Herein, we present a computational study aimed at identifying small molecules potentially able to target RBD. Although targeting PPI remains a challenge in drug discovery, our investigation highlights that interaction between SARS‐CoV‐2 RBD and ACE2 PD might be prone to small molecule modulation, due to the hydrophilic nature of the bi‐molecular recognition process and the presence of druggable hot spots. The fundamental objective is to identify, and provide to the international scientific community, hit molecules potentially suitable to enter the drug discovery process, preclinical validation and development.
has issue date
2020-07-23
(
xsd:dateTime
)
bibo:doi
10.1002/cmdc.202000259
bibo:pmid
32700795
has license
no-cc
sha1sum (hex)
0b4dd1967b5d3157c6eb9c01ac59283bfcb93c75
schema:url
https://doi.org/10.1002/cmdc.202000259
resource representing a document's title
Targeting SARS‐CoV‐2 RBD interface: a supervised computational data‐driven approach to identify potential modulators
has PubMed Central identifier
PMC7405135
has PubMed identifier
32700795
schema:publication
ChemMedChem
resource representing a document's body
covid:0b4dd1967b5d3157c6eb9c01ac59283bfcb93c75#body_text
is
schema:about
of
named entity '2019'
named entity 'identifying'
named entity 'Targeting'
named entity 'RBD'
named entity 'identify'
named entity 'IDENTIFYING'
named entity 'SUITABLE'
named entity 'VALIDATION'
named entity 'PRECLINICAL'
named entity 'glycoprotein'
named entity 'ACE2'
named entity 'validation'
named entity 'promoting'
named entity 'receptor recognition'
named entity 'Disease'
named entity 'study'
named entity 'drug discovery'
named entity 'peptidase'
named entity 'development'
named entity 'host'
named entity 'Targeting'
named entity 'Angiotensin-converting enzyme 2'
named entity 'scientific community'
named entity 'RBD'
named entity 'ACE2'
named entity 'SARS-CoV-2'
named entity 'SARS-CoV-2'
named entity 'host cell'
named entity 'LigandScout'
named entity 'protein structures'
named entity 'hydrogen bond'
named entity 'N-terminal'
named entity 'emerging viruses'
named entity 'H-bond'
named entity 'force field'
named entity 'glycoproteins'
named entity 'binding affinity'
named entity 'systemic viral'
named entity 'peptidase'
named entity 'PPI'
named entity 'viral load'
named entity 'GBSA'
named entity 'hydrogen bonds'
named entity 'RMSD'
named entity 'ACE2'
named entity 'pharmacophore'
named entity 'hydroxyl side chain'
named entity 'D. E. Shaw research'
named entity 'RBD'
named entity 'small molecule'
named entity 'protein'
named entity 'PDB'
named entity 'Middle East respiratory syndrome coronavirus'
named entity 'PDB'
named entity 'molecular docking'
named entity 'protein'
named entity 'amino acid'
named entity 'PDB'
named entity 'SARS-CoV'
named entity 'infection'
named entity 'hydrogen bond'
named entity 'COVID-19'
named entity 'SARS-CoV'
named entity 'hydrophobic'
named entity 'protein'
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