About: Divergent coronaviruses detected in wild birds in Brazil, including a central park in São Paulo

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About: Divergent coronaviruses detected in wild birds in Brazil, including a central park in São Paulo Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Divergent coronaviruses detected in wild birds in Brazil, including a central park in São Paulo
Creator	Marcatti, Roberta Ometto, Tatiana Serafini, Patrícia Durigon, Edison Thomazelli, Luciano Barbosa, Carla De Aguiar, Daniel Góes, Gustavo Jansen De Araujo, & Luiz, & Mendes De Azevedo Junior, Severino Nardi, Marcello Neto, Isaac Petry, Maria Pinho, João Rodrigues, Roberta
topic	covid:2851e74df0bf3b3169b499537c05b5e52afb32fd#this
source	Medline; PMC
abstract	Coronaviruses are single-stranded positive-sense RNA viruses associated with important avian diseases. Their relatively high rates of mutation and recombination frequencies allow them to adapt to new hosts and ecological niches. Although Brazil has 18% of global avian species diversity, studies regarding the presence of avian viral diseases in wild birds in South America are scarce. In this study, we performed a retrospective analysis of the presence of CoVs in 746 wild birds. Oropharyngeal and cloacal swabs were obtained and placed together in vials containing VTM transport medium collected in different regions of Brazil between 2006 and 2013. Screening for viral nucleic acid was performed using conventional RT-PCR and pancoronavirus nested PCR. Positive samples were characterized by partial sequencing of the RNA-dependent RNA polymerase (RdRp) gene, and ensuing phylogenetic analysis was performed to investigate the association between virus epidemiology and bird migration routes. Coronavirus RNA were detected and sequenced from six samples, in which three were related to gammacoronaviruses group and the other three to deltacoronavirus group. Our study documents the presence of CoVs related to avian gamma- and deltacoronaviruses circulating in both urban- and poultry-farm regions of Brazil, implicating wild birds as potential carriers of CoVs which may represent a risk to poultry farms and public health in Brazil. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s42770-019-00065-7) contains supplementary material, which is available to authorized users.
has issue date	2019-03-15(xsd:dateTime)
bibo:doi	10.1007/s42770-019-00065-7
bibo:pmid	30877663
has license	bronze-oa
sha1sum (hex)	2851e74df0bf3b3169b499537c05b5e52afb32fd
schema:url	https://doi.org/10.1007/s42770-019-00065-7
resource representing a document's title	Divergent coronaviruses detected in wild birds in Brazil, including a central park in São Paulo
has PubMed Central identifier	PMC6863219
has PubMed identifier	30877663
schema:publication	Brazilian Journal of Microbiology
resource representing a document's body	covid:2851e74df0bf3b3169b499537c05b5e52afb32fd#body_text
is http://vocab.deri.ie/void#inDataset of	proxy:http/ns.inria.fr/covid19/2851e74df0bf3b3169b499537c05b5e52afb32fd
is schema:about of	named entity 'CENTRAL PARK' named entity 'samples' named entity 'routes' named entity 'avian' named entity 'ecological niches' named entity 'viruses' named entity 'regions' named entity 'circulating' named entity 'central park' named entity 'FARM' named entity 'VIRAL DISEASES' named entity 'GLOBAL' named entity 'MIGRATION ROUTES' named entity 'PARTIAL' named entity 'SAMPLES' named entity 'POSITIVE-SENSE RNA VIRUSES' named entity 'BIRD MIGRATION' named entity 'BRAZIL' named entity 'STUDIES' named entity 'POSITIVE' named entity 'USING' named entity 'PUBLIC HEALTH' named entity 'WILD' named entity 'MUTATION' named entity 'SINGLE' named entity 'CORONAVIRUSES' named entity 'CLOACAL' named entity 'SOUTH AMERICA' named entity 'INCLUDING' named entity 'RATES' named entity 'BIRDS' named entity 'COVS' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'PHYLOGENETIC ANALYSIS' named entity 'VIALS' named entity 'CORONAVIRUSES' named entity 'DETECTED' named entity 'WILD' named entity 'IN S' named entity 'CONVENTIONAL' named entity '746' named entity 'DIFFERENT' named entity 'COLLECTED' named entity 'SWABS' named entity 'SEQUENCING' named entity 'BRAZIL' named entity 'RETROSPECTIVE ANALYSIS' named entity 'THEIR' named entity 'SCREENING' named entity 'IMPORTANT' named entity 'OROPHARYNGEAL' named entity 'TRANSPORT MEDIUM' named entity 'NEW' named entity 'STUDY' named entity 'ECOLOGICAL NICHES' named entity 'EPIDEMIOLOGY' named entity 'ASSOCIATION' named entity 'VIRUS' named entity 'ALLOW' named entity 'OBTAINED' named entity 'VIRAL NUCLEIC ACID' named entity 'RELATED' named entity 'AVIAN DISEASES' named entity 'CHARACTERIZED'

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