About: The Functional Roles of the Cis-acting Elements in Bamboo mosaic virus RNA Genome

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	The Functional Roles of the Cis-acting Elements in Bamboo mosaic virus RNA Genome
Creator	Tsai, Ching-Hsiu Huang, Ying-Wen Chen, I-Hsuan Simon, Anne Miller, W White, K
Source	PMC
abstract	Bamboo mosaic virus (BaMV), which belongs to the genus Potexvirus in the family Alphaflexiviridae, has a single-stranded positive-sense RNA genome that is approximately 6400 nucleotides (nts) in length. Positive-sense RNA viruses can use genomic RNA as a template for translation and replication after entering a suitable host cell. Furthermore, such viral RNA is recognized by capsid protein for packaging and by viral movement protein(s) or the movement protein complex for cell-to-cell and systemic movement. Hence, viral RNA must contain signals for different functions to complete the viral infection cycle. In this review, we examine various cis-acting elements in the genome of BaMV. The highly structured 3′ untranslated region (UTR) of the BaMV genomic RNA plays multiple roles in the BaMV infection cycle, including targeting chloroplasts for RNA replication, providing an initiation site for the synthesis of minus-strand RNA, signaling for polyadenylation, and directing viral long-distance movement. The nt at the extreme 3′ end and the structure of the 3′-terminus of minus-strand RNA are involved in the initiation of plus-strand genomic RNA synthesis. Both these regions have been mapped and reported to interact with the viral-encoded RNA-dependent RNA polymerase. Moreover, the sequences upstream of open reading frames (ORFs) 2, 3, and 5 are involved in regulating subgenomic RNA synthesis. The cis-acting elements that were identified in BaMV RNA are discussed and compared with those of other potexviruses.
has issue date	2017-04-13(xsd:dateTime)
bibo:doi	10.3389/fmicb.2017.00645
bibo:pmid	28450857
has license	cc-by
sha1sum (hex)	2911b1cc77f7c2bf1f8743673d3d2df7d7993aee
schema:url	https://doi.org/10.3389/fmicb.2017.00645
resource representing a document's title	The Functional Roles of the Cis-acting Elements in Bamboo mosaic virus RNA Genome
has PubMed Central identifier	PMC5390519
has PubMed identifier	28450857
schema:publication	Front Microbiol
resource representing a document's body	covid:2911b1cc77f7c2bf1f8743673d3d2df7d7993aee#body_text
is schema:about of	named entity 'ROLES' named entity 'polymerase' named entity 'cell' named entity 'initiation' named entity 'The' named entity 'Functional' named entity 'RNA' named entity 'ENCODED' named entity 'CAPSID PROTEIN' named entity 'REGIONS' named entity 'PROVIDING' named entity 'TERMINUS' named entity 'VIRAL MOVEMENT PROTEIN' named entity 'GENOMIC' named entity 'VIRAL INFECTION' named entity 'VIRAL RNA' named entity 'STRUCTURE' named entity 'ROLES' named entity 'STRUCTURED' named entity 'REGULATING' named entity 'RNA REPLICATION' named entity 'PACKAGING' named entity 'VIRAL-' named entity 'CHLOROPLASTS' named entity 'TO INTERACT WITH' named entity 'SITE' named entity 'SYSTEMIC' named entity 'VIRAL' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'USE' named entity 'SYNTHESIS' named entity 'PROTEIN ' named entity 'FAMILY' named entity 'GENUS' named entity 'POTEXVIRUS' named entity 'INVOLVED' named entity 'TARGETING' named entity 'NUCLEOTIDES' named entity 'SEQUENCES' named entity 'APPROXIMATELY' named entity 'REPORTED' named entity 'FUNCTIONS' named entity 'RNA SYNTHESIS' named entity 'DISTANCE' named entity 'SIGNALING' named entity '28S' named entity 'CYCLE' named entity 'HOST CELL' named entity 'CELL' named entity 'INFECTION' named entity 'END' named entity 'BAMBOO MOSAIC VIRUS' named entity 'MINUS' named entity 'MOVEMENT' named entity 'OPEN READING FRAMES' named entity 'MULTIPLE' named entity 'INCLUDING' named entity 'HIGHLY' named entity 'SENSE' named entity 'FUNCTIONAL' named entity 'POSITIVE' named entity 'BAMBOO MOSAIC VIRUS' named entity 'ELEMENTS' named entity 'CIS' named entity 'INITIATION' named entity 'PLAYS' named entity 'EXTREME' named entity 'CONTAIN' named entity 'COMPARED' named entity 'TEMPLATE' named entity 'DIFFERENT' named entity 'CIS' named entity 'ALPHAFLEXIVIRIDAE' named entity 'SINGLE' named entity 'COMPLETE' named entity 'IDENTIFIED'

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