About: CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic

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About: CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic
Creator	Li, Li Akther, Saymon Bezrucenkovas, Edgaras Di, Lia Panlasigui, Christopher Qiu, Weigang Sulkow, Brian
Source	BioRxiv
abstract	Summary Genome sequences constitute the primary evidence on the origin and spread of the 2019-2020 Covid-19 pandemic. Rapid comparative analysis of coronavirus SARS-CoV-2 genomes is critical for disease control, outbreak forecasting, and developing clinical interventions. CoV Genome Tracker is a web portal dedicated to trace Covid-19 outbreaks in real time using a haplotype network, an accurate and scalable representation of genomic changes in a rapidly evolving population. We resolve the direction of mutations by using a bat-associated genome as outgroup. At a broader evolutionary time scale, a companion browser provides gene-by-gene and codon-by-codon evolutionary rates to facilitate the search for molecular targets of clinical interventions. Availability and Implementation CoV Genome Tracker is publicly available at http://cov.genometracker.org and updated weekly with the data downloaded from GISAID (http://gisaid.org). The website is implemented with a custom JavaScript script based on jQuery (https://jquery.com) and D3-force (https://github.com/d3/d3-force). Contact weigang@genectr.hunter.cuny.edu, City University of New York, Hunter College Supplementary Information All supporting scripts developed in JavaScript, Python, BASH, and PERL programming languages are available as Open Source at the GitHub repository https://github.com/weigangq/cov-browser.
has issue date	2020-04-14(xsd:dateTime)
bibo:doi	10.1101/2020.04.10.036343
has license	biorxiv
sha1sum (hex)	2d2fff47bd25da65cc1a7fd3d43bbe26aa050660
schema:url	https://doi.org/10.1101/2020.04.10.036343
resource representing a document's title	CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic
schema:publication	bioRxiv
resource representing a document's body	covid:2d2fff47bd25da65cc1a7fd3d43bbe26aa050660#body_text
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