About: Complete Nucleotide Sequence of Ryegrass Mottle Virus : A New Species of the Genus Sobemovirus

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About: Complete Nucleotide Sequence of Ryegrass Mottle Virus : A New Species of the Genus Sobemovirus Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Complete Nucleotide Sequence of Ryegrass Mottle Virus : A New Species of the Genus Sobemovirus
Creator	Takahashi', Mami Toriyama1s3, Shigemitsu Zhang'y2, Feiyun
Source	PMC
abstract	The genome of Ryegrass mottle virus (RGMoV) comprises 4210 nucleotides. The genomic RNA contains four open reading frames (ORFs). The largest ORF 2 encodes a polyprotein of 947 amino acids (103.6 kDa), which codes for a serine protease and an RNA-dependent RNA polymerase. The viral coat protein is encoded on ORF 4 present at the 3′-proximal region. Other ORFs 1 and 3 encode the predicted 14.6 kDa and 19.8 kDa proteins of unknown function. The consensus signal for frameshifting, heptanucleotide UUUAAAC and a stem-loop structure just downstream is in front of the AUG codon of ORF 3. Analysis of the in vitro translation products of RGMoV RNA suggests that the 68 kDa protein may represent a fusion protein of ORF 2-ORF 3 produced by frameshifting. The protease region of the polyprotein and coat protein have a low similarity with that of the sobemoviruses (approximately 25% amino acid identity), while the RNA-dependent RNA polymerase region has particularly strong similarity (54 to 60% of more than 350 amino acid residues). The sequence similarities of RGMoV to the sobemoviruses, together with the characteristic genome organization indicate that RGMoV is a new species of the genus Sobemovirus.
has issue date	2001-01-01(xsd:dateTime)
bibo:doi	10.1007/pl00012989
bibo:pmid	32214868
has license	no-cc
sha1sum (hex)	327dba50d84f585f0473a4f31ef7932906cba7bf
schema:url	https://doi.org/10.1007/pl00012989
resource representing a document's title	Complete Nucleotide Sequence of Ryegrass Mottle Virus : A New Species of the Genus Sobemovirus
has PubMed Central identifier	PMC7088213
has PubMed identifier	32214868
schema:publication	J
resource representing a document's body	covid:327dba50d84f585f0473a4f31ef7932906cba7bf#body_text
is schema:about of	named entity 'AMINO ACIDS' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'DOWNSTREAM' named entity 'CONSENSUS' named entity 'ANALYSIS' named entity '28103' named entity 'LARGEST' named entity 'ENCODED' named entity 'NEW SPECIES' covid:arg/327dba50d84f585f0473a4f31ef7932906cba7bf named entity 'amino acids' named entity 'coat protein' named entity 'frameshifting' named entity 'RNA-dependent RNA polymerase' named entity 'ORF' named entity 'stem-loop structure' named entity 'polyprotein' named entity 'Sobemovirus' named entity 'kDa' named entity 'ORFs' named entity 'amino acid' named entity 'ORFs' named entity 'Recombinant' named entity '28 nm' named entity 'yeast' named entity 'virus' named entity 'amino acid sequence identity' named entity 'Germany' named entity 'proteolytic cleavage' named entity 'kDa' named entity 'Gaithersburg' named entity 'genome' named entity 'RNA' named entity 'SBMV' named entity 'amino acids' named entity 'fusion protein' named entity 'coat protein' named entity 'protease' named entity 'PVDF' named entity 'SBMV' named entity 'nucleic acid' named entity 'Norwegian' named entity 'polyprotein' named entity 'amino acids' named entity 'BioRad' named entity 'coat protein' named entity 'virus' named entity 'RNA polymerase' named entity 'DNA polymerase' named entity 'nucleotide sequence' named entity 'electrophoresed' named entity 'Pharmacia' named entity 'protease' named entity 'single-stranded' named entity 'polyacrylamide' named entity 'Yokohama' named entity 'Pharmacia' named entity 'polymerase' named entity 'RNA polymerase' named entity 'molecular weight' named entity 'viral coat protein' named entity 'RNA' named entity 'RNAs' named entity 'serine protease' named entity 'ORF' named entity 'P3C' named entity 'protein' named entity 'SDS-PAGE' named entity 'cocksfoot' named entity 'N-terminus' named entity 'Barley yellow dwarf virus' named entity 'polyprotein' named entity 'genus' named entity 'Sweden' named entity 'VPg' named entity 'Southern bean mosaic virus' named entity 'ORF' named entity 'molecule' named entity 'amino acid residues'

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