About: Molecular detection of bovine Noroviruses in Argentinean dairy calves: Circulation of a tentative new genotype

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About: Molecular detection of bovine Noroviruses in Argentinean dairy calves: Circulation of a tentative new genotype Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Molecular detection of bovine Noroviruses in Argentinean dairy calves: Circulation of a tentative new genotype
Creator	Matthijnssens, Jelle Conceição-Neto, Nádia Heylen, Elisabeth Zeller, Mark Parreño, Viviana Thiry, Etienne Mauroy, Axel Badaracco, Alejandra Bilbao, Gladys Bok, Marina Ferragut, Fátima Uriarte, Enrique Vega, Celina
source	Elsevier; Medline; PMC
abstract	Bovine noroviruses are enteric pathogens detected in fecal samples of both diarrheic and non-diarrheic calves from several countries worldwide. However, epidemiological information regarding bovine noroviruses is still lacking for many important cattle producing countries from South America. In this study, three bovine norovirus genogroup III sequences were determined by conventional RT-PCR and Sanger sequencing in feces from diarrheic dairy calves from Argentina (B4836, B4848, and B4881, all collected in 2012). Phylogenetic studies based on a partial coding region for the RNA-dependent RNA polymerase (RdRp, 503 nucleotides) of these three samples suggested that two of them (B4836 and B4881) belong to genotype 2 (GIII.2) while the third one (B4848) was more closely related to genotype 1 (GIII.1) strains. By deep sequencing, the capsid region from two of these strains could be determined. This confirmed the circulation of genotype 1 (B4848) together with the presence of another sequence (B4881) sharing its highest genetic relatedness with genotype 1, but sufficiently distant to constitute a new genotype. This latter strain was shown in silico to be a recombinant: phylogenetic divergence was detected between its RNA-dependent RNA polymerase coding sequence (genotype GIII.2) and its capsid protein coding sequence (genotype GIII.1 or a potential norovirus genotype). According to this data, this strain could be the second genotype GIII.2_GIII.1 bovine norovirus recombinant described in literature worldwide. Further analysis suggested that this strain could even be a potential norovirus GIII genotype, tentatively named GIII.4. The data provides important epidemiological and evolutionary information on bovine noroviruses circulating in South America.
has issue date	2016-03-03(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2016.02.034
bibo:pmid	26940636
has license	no-cc
sha1sum (hex)	39b54c3e0c3560b23189d363831c0b04f213055f
schema:url	https://doi.org/10.1016/j.meegid.2016.02.034
resource representing a document's title	Molecular detection of bovine Noroviruses in Argentinean dairy calves: Circulation of a tentative new genotype
has PubMed Central identifier	PMC7185671
has PubMed identifier	26940636
schema:publication	Infect Genet Evol
resource representing a document's body	covid:39b54c3e0c3560b23189d363831c0b04f213055f#body_text
is schema:about of	named entity 'recombinant' named entity 'genotype' named entity 'norovirus' named entity 'coding region' named entity 'data' named entity 'Argentina' named entity 'NOROVIRUSES' named entity 'NEW' named entity 'MOLECULAR' named entity 'ARGENTINEAN' named entity 'CONVENTIONAL' named entity 'FECES' named entity 'BASED' named entity 'DATA' named entity 'CIRCULATING' named entity 'EPIDEMIOLOGICAL' named entity 'DIVERGENCE' named entity 'CONFIRMED' named entity 'PROVIDES' named entity 'IN SILICO' named entity 'THESE' named entity 'CAPSID PROTEIN' named entity 'DETERMINED BY' named entity 'SHARING' named entity 'CODING SEQUENCE' named entity 'GENETIC RELATEDNESS' named entity 'ANALYSIS' named entity 'RT-PCR' named entity 'ITS' named entity 'CIRCULATION' named entity 'FECAL' named entity 'ACCORDING' named entity 'STRAINS' named entity 'WORLDWIDE' named entity 'NOROVIRUSES' named entity 'SOUTH AMERICA' named entity 'SANGER SEQUENCING' named entity 'CATTLE' named entity 'CALVES' named entity 'DESCRIBED' named entity 'DEEP SEQUENCING' named entity 'REGION' named entity 'DAIRY CALVES' named entity 'STUDIES' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'GENOTYPE' named entity 'RELATED' named entity 'HIGHEST' named entity 'BOVINE' named entity 'CODING REGION' named entity 'STRAIN' named entity 'DETECTED' named entity 'BOVINE' named entity 'CIRCULATION' named entity 'SEQUENCES' named entity 'COUNTRIES' named entity 'DETECTION' named entity 'COLLECTED' named entity 'PROTEIN CODING SEQUENCE' named entity 'BUT' named entity 'STUDY' named entity 'ENTERIC' named entity 'GENOTYPE 1' named entity 'III' named entity 'GIII' named entity 'PATHOGENS' named entity 'SAMPLES' named entity 'NEW' named entity 'LACKING'

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