About: Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains

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About: Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains
Creator	Friedman, Stephanie Genthner, Fred Snellgrove, Wyatt
Source	Medline; PMC
abstract	Bacteriophages are likely the most abundant entities in the aquatic environment, yet knowledge of their ecology is limited. During a fecal source-tracking study, two genetically novel Leviviridae strains were discovered. Although the novel strains were isolated from coastal waters 1130 km apart (North Carolina and Rhode Island, USA), these strains shared 97% nucleotide similarity and 97–100% amino acid similarity. When the novel strains were compared to nine Levivirus genogroup I strains, they shared 95–100% similarity among the maturation, capsid and lysis proteins, but only 84–85% in the RNA-dependent RNA polymerase gene. Further bioinformatic analyses suggested a recombination event occurred. To the best of our knowledge, this is the first description of viral recombinants in environmental Leviviridae ssRNA bacteriophages.
has issue date	2012-09-13(xsd:dateTime)
bibo:doi	10.3390/v4091548
bibo:pmid	23170172
has license	cc-by
sha1sum (hex)	3d1d14a7dc9189add63df0501822830a3291a850
schema:url	https://doi.org/10.3390/v4091548
resource representing a document's title	Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains
has PubMed Central identifier	PMC3499819
has PubMed identifier	23170172
schema:publication	Viruses
resource representing a document's body	covid:3d1d14a7dc9189add63df0501822830a3291a850#body_text
is schema:about of	named entity 'RECOMBINATION' named entity 'ENVIRONMENTAL' named entity 'COLIPHAGES' named entity 'TRACKING' named entity 'OUR' named entity '100%' named entity 'CAPSID' named entity 'DESCRIPTION' named entity 'LEVIVIRUS' named entity 'STRAINS' named entity 'KNOWLEDGE' named entity 'LIMITED' named entity 'APART' named entity 'LYSIS' named entity 'THEIR' named entity 'AMINO ACID' named entity 'STUDY' named entity 'AQUATIC ENVIRONMENT' named entity 'LIKELY' named entity 'RECOMBINATION' named entity 'ENVIRONMENTAL' named entity 'COMPARED' named entity 'CAROLINA' named entity 'SHARED' named entity 'NUCLEOTIDE' named entity 'BACTERIOPHAGES' named entity 'LEVIVIRIDAE' named entity 'OCCURRED' named entity 'ABUNDANT' named entity 'PROTEINS' named entity 'SIMILARITY' named entity 'STRAINS' named entity 'ECOLOGY' named entity 'SINGLE-STRANDED RNA' named entity 'BUT' named entity '1130' named entity 'MATURATION' named entity 'VIRAL' named entity 'LEVIVIRIDAE' named entity 'LEVIVIRUS' named entity 'USA' named entity 'SEQUENCES' named entity 'WATERS' named entity 'SSRNA' named entity 'SOURCE' named entity 'RNA-DEPENDENT RNA POLYMERASE' named entity 'BIOINFORMATIC' named entity 'NOVEL' named entity 'RECOMBINANTS' named entity 'NOVEL' named entity 'EVIDENCE FOR' named entity 'GENOMIC' named entity 'BEST' named entity 'RHODE ISLAND' named entity 'ISOLATED' named entity 'THESE' named entity 'COASTAL' named entity 'POLYMERASE GENE' named entity 'EVENT' named entity 'FECAL' covid:arg/3d1d14a7dc9189add63df0501822830a3291a850 named entity 'Leviviridae' named entity 'North Carolina' named entity 'Levivirus' named entity 'lysis' named entity 'capsid' named entity 'RNA-dependent RNA polymerase' named entity 'Leviviridae' named entity 'Coliphages' named entity 'genome' named entity 'positive sense' named entity 'recombination' named entity 'RNA molecules' named entity 'ssRNA' named entity 'Levivirus' named entity 'phylogenetic analysis' named entity 'primers' named entity 'replicase' named entity 'SimPlot'

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