About: New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain
Creator	Schirmeister, Tanja Barthels, Fabian Distler, Ute Engels, Bernd Hellmich, Ute Johe, Patrick Jung, Sascha Klein, Philipp Kühlborn, Jonas Opatz, Till Tenzer, Stefan Wagner, Annika Waigel, Waldemar
Source	PMC
abstract	Electrophilic (het)arenes can undergo reactions with nucleophiles yielding π- or Meisenheimer (σ-) complexes or the products of the S(N)Ar addition/elimination reactions. Such building blocks have only rarely been employed for the design of enzyme inhibitors. Herein, we demonstrate the combination of a peptidic recognition sequence with such electrophilic (het)arenes to generate highly active inhibitors of disease-relevant proteases. We further elucidate an unexpected mode of action for the trypanosomal protease rhodesain using NMR spectroscopy and mass spectrometry, enzyme kinetics and various types of simulations. After hydrolysis of an ester function in the recognition sequence of a weakly active prodrug inhibitor, the liberated carboxylic acid represents a highly potent inhibitor of rhodesain (K(i) = 4.0 nM). The simulations indicate that, after the cleavage of the ester, the carboxylic acid leaves the active site and re-binds to the enzyme in an orientation that allows the formation of a very stable π-complex between the catalytic dyad (Cys-25/His-162) of rhodesain and the electrophilic aromatic moiety. The reversible inhibition mode results because the S(N)Ar reaction, which is found in an alkaline solvent containing a low molecular weight thiol, is hindered within the enzyme due to the presence of the positively charged imidazolium ring of His-162. Comparisons between measured and calculated NMR shifts support this interpretation.
has issue date	2020-03-23(xsd:dateTime)
bibo:doi	10.3390/molecules25061451
bibo:pmid	32210166
has license	cc-by
sha1sum (hex)	3de2d665c98144d8667e88e520575c751a5208c7
schema:url	https://doi.org/10.3390/molecules25061451
resource representing a document's title	New Cysteine Protease Inhibitors: Electrophilic (Het)arenes and Unexpected Prodrug Identification for the Trypanosoma Protease Rhodesain
has PubMed Central identifier	PMC7145299
has PubMed identifier	32210166
schema:publication	Molecules
resource representing a document's body	covid:3de2d665c98144d8667e88e520575c751a5208c7#body_text
is schema:about of	named entity 'Prodrug' named entity 'Cysteine Protease Inhibitors' named entity 'mmol' named entity 'DMSO' named entity 'nmol' named entity 'aqueous phase' named entity 'NaCl' named entity 'fluoro' named entity 'hydrochloric acid' named entity 'solvent' named entity 'mmol' named entity '5 mM' named entity 'Bruker' named entity '850 nM' named entity 'inert gas' named entity 'crystal structure' named entity 'DMSO' named entity 'μmol' named entity 'ethyl acetate' named entity '100 %' named entity 'Melting points' named entity '589 nm' named entity 'reaction mixture' named entity 'gradient' named entity 'DMSO' named entity 'DMSO' named entity 'Molecular Operating Environment' named entity 'mmol' named entity 'SiO2' named entity 'room temperature' named entity 'IR spectra' named entity 'dichloromethane' named entity 'crystal structure' named entity 'nitro' named entity 'mmol' named entity 'EC50' named entity 'ion trap' named entity 'dinitrobenzene' named entity 'chromatography' named entity 'LC-MS' named entity 'enzymatic activity' named entity 'ester' named entity 'diode array detector' named entity 'cpd' named entity 'DMSO' named entity 'spectra' named entity 'Thermo Scientific' named entity 'carbon atoms' named entity 'cpd' named entity 'ethyl acetate' named entity 'ethanol' named entity 'EDTA' named entity 'mmol' named entity '1 mm' named entity 'HCl' named entity 'Phe' named entity '2.7' named entity 'phenylalanine' named entity 'hydrolysis' named entity 'ester' named entity '0.1' named entity 'force field' named entity 'pentane' named entity 'Waters Corporation' named entity 'Protein' named entity 'SiO2' named entity 'mmol' named entity 'silica gel' named entity 'mmol'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software