About: Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses

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About: Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses
Creator	Oka, Tomoichiro Katayama, Yukie Masuda, Tsuneyuki Mizutani, Tetsuya Nagai, Makoto Naoi, Yuki Oba, Mami Omatsu, Tsutomu Tsuchiaka, Shinobu Aoki, Hiroshi Ito, Mika Shirai, Junsuke Katayama, Kazuhiko Otomaru, Konosuke Furuya, Tetsuya Haga, Kei Sato, Mitsuo Sugimura, Satoshi Yamasato, Hiroshi
Source	Elsevier; Medline; PMC
abstract	Bovine toroviruses (BToVs), belong to the subfamily Toroviridae within the family Coronaviridae, and are pathogens, causing enteric disease in cattle. In Japan, BToVs are distributed throughout the country and cause gastrointestinal infection of calves and cows. In the present study, complete genome sequences of two Japanese BToVs and partial genome sequences of two Japanese BToVs and one porcine torovirus (PToV) from distant regions in Japan were determined and genetic analyses were performed. Pairwise nucleotide comparison and phylogenetic analyses revealed that Japanese BToVs shared high identity with each other and showed high similarities with BToV Breda1 strain in S, M, and HE coding regions. Japanese BToVs showed high similarities with porcine toroviruses in ORF1a, ORF1b, and N coding regions and the 5′ and 3′ untranslated regions, suggestive of a natural recombination event. Recombination analyses mapped the putative recombinant breakpoints to the 3′ ends of the ORF1b and HE regions. These findings suggest that the interspecies recombinant nature of Japanese BToVs resulted in a closer relationship between BToV Breda1 and PToVs.
has issue date	2015-12-18(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2015.12.013
bibo:pmid	26708248
has license	no-cc
sha1sum (hex)	45cea3e36f83adaa347b9b323647d0bf0913ad75
schema:url	https://doi.org/10.1016/j.meegid.2015.12.013
resource representing a document's title	Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses
has PubMed Central identifier	PMC7185535
has PubMed identifier	26708248
schema:publication	Infect Genet Evol
resource representing a document's body	covid:45cea3e36f83adaa347b9b323647d0bf0913ad75#body_text
is schema:about of	named entity 'recombination' named entity 'cattle' named entity 'genome' named entity 'Japanese' named entity 'bovine' named entity 'TOROVIRUSES' named entity 'NATURAL' named entity 'BOVINE' named entity 'NUCLEOTIDE' named entity 'RELATIONSHIP' named entity 'DISTRIBUTED' named entity 'MAPPED' named entity 'ENTERIC' named entity 'CALVES' named entity 'DISEASE' named entity 'CODING' named entity 'GENOME' named entity 'IDENTITY' named entity 'SUBFAMILY' named entity 'NATURE' named entity 'UNTRANSLATED REGIONS' named entity 'COWS' named entity 'IN S' named entity 'GASTROINTESTINAL INFECTION' named entity 'RECOMBINATION' named entity 'PORCINE TOROVIRUS' named entity 'CAUSING' named entity 'JAPANESE' named entity 'REVEALS' named entity 'SUGGEST' named entity 'THESE' named entity 'JAPAN' named entity 'HIGH' named entity 'COMPLETE' named entity 'PARTIAL' named entity 'ENDS' named entity 'FAMILY CORONAVIRIDAE' named entity 'TOROVIRUSES' named entity 'JAPANESE' named entity 'SHARED' named entity 'EVENT' named entity 'FINDINGS' named entity 'RECOMBINATION' named entity 'WHOLE GENOME' named entity 'GENOME ANALYSIS' named entity 'PORCINE' named entity 'BOVINE' named entity 'NATURAL' named entity 'SEQUENCES' named entity 'DETERMINED' named entity 'COUNTRY' named entity 'CATTLE' named entity 'REVEALED' named entity 'COMPARISON' named entity 'CAUSE' named entity 'SUGGESTIVE OF' named entity 'PATHOGENS' named entity 'PRESENT' named entity 'PORCINE' named entity 'STUDY' named entity 'TOROVIRIDAE' named entity 'STRAIN' named entity '80%'

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