About: Genetic diversity of porcine sapoviruses

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About: Genetic diversity of porcine sapoviruses Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Genetic diversity of porcine sapoviruses
Creator	Cho, Kyoung-Oh Hyun, Bang-Hun Jeong, Cheol Jeong, Jae-Ho Kang, Mun-Il Kim, Ha-Hyun Kim, Sang-Ki Park, Sang-Ik Park, Su-Jin Park, Sung-Hee Saif, Linda Choy, Hyon
Source	Elsevier; Medline; PMC
abstract	Sapoviruses (SaVs) within the Caliciviridae family are an important cause of gastroenteritis in both humans and animals. Although the widespread occurrence of divergent human SaV strains has been reported, there have only been a few studies of porcine SaVs examining their genetic diversity. The aim of this study was to assess the genetic diversity of porcine SaVs in piglets with diarrhea in South Korea. Two hundred and thirty-seven fecal specimens from piglets with diarrhea were examined from 78 farms over a 2-year period from six provinces in South Korea. Overall, 69 (29.1%) of the samples from five provinces tested positive for porcine SaVs by either RT-PCR or nested PCR with the primer pairs specific to porcine SaVs. An analysis of the partial capsid gene (757 bp) of 12 porcine SaVs detected from fecal samples showed genetic divergence, not only among the Korean porcine SaVs (67.7–99.1%), but also between Korean and American porcine SaVs (69.1–90.2%). Interestingly, one strain (Po/SaV/JN-MA113/05/Korea), formed a second porcine SaV/GIII genotype, and is tentatively called GIII/2. This strain had a 0.236–0.405 inter-cluster distance with the other strains in the same genogroup, which is comparable to the distances between the established GI and GII SaVs. Furthermore, two potential recombinant porcine SaVs were identified. In conclusion, porcine SaV infections are common in diarrheic piglets in South Korea. The infecting strains are genetically diverse, and include a newly recognized genotype and recombinant viruses within genogroup III.
has issue date	2007-06-21(xsd:dateTime)
bibo:doi	10.1016/j.vetmic.2007.02.008
bibo:pmid	17382492
has license	no-cc
sha1sum (hex)	4e8ed29acb3519e7f95928e88892626bd4d9cd72
schema:url	https://doi.org/10.1016/j.vetmic.2007.02.008
resource representing a document's title	Genetic diversity of porcine sapoviruses
has PubMed Central identifier	PMC7117395
has PubMed identifier	17382492
schema:publication	Vet Microbiol
resource representing a document's body	covid:4e8ed29acb3519e7f95928e88892626bd4d9cd72#body_text
is schema:about of	named entity 'GENETIC DIVERSITY' named entity 'Caliciviridae' named entity 'positive' named entity '757' named entity 'capsid' named entity 'provinces' named entity 'farms' named entity 'SAPOVIRUSES' named entity 'TWO HUNDRED' named entity 'YEAR' named entity 'COMMON' named entity '405' named entity 'STRAINS' named entity 'AMERICAN' named entity 'SAV' named entity 'DIVERSE' named entity 'SECOND' named entity 'PAIRS' named entity 'SOUTH KOREA' named entity 'KOREAN' named entity 'DISTANCE' named entity 'OVERALL' named entity 'PRIMER' named entity '28757' named entity 'GASTROENTERITIS' named entity 'NEWLY' named entity 'REPORTED' named entity 'GENOTYPE' named entity 'ANALYSIS' named entity 'EXAMINING' named entity 'HUMAN' named entity 'RECOMBINANT' named entity 'THIRTY-SEVEN' named entity 'DIARRHEA' named entity 'PORCINE' named entity 'STUDIES' named entity 'GII' named entity 'EITHER' named entity 'SAMPLES' named entity 'IMPORTANT' named entity 'CAPSID' named entity 'PERIOD' named entity 'SAVS' named entity 'EXAMINED' named entity 'POTENTIAL' named entity 'STRAIN' named entity 'STUDY' named entity 'TESTED' named entity 'ESTABLISHED' named entity 'FAMILY' named entity 'INFECTIONS' named entity 'ANIMALS' named entity 'THEIR' named entity 'GENETIC DIVERGENCE' named entity 'HUMANS' named entity 'CLUSTER' named entity 'CALICIVIRIDAE' named entity 'NESTED PCR ' named entity 'FARMS' named entity 'GIII' named entity 'SPECIFIC' named entity 'GENE' named entity 'HAVE' named entity 'ASSESS' named entity 'RT-PCR' named entity 'GENETIC DIVERSITY' named entity 'SAPOVIRUSES' named entity 'INFECTING' named entity 'INCLUDE' named entity 'PARTIAL'

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