About: High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs
Creator	Bustamante, C Huang, C Hughes, C Kim, J Liu, D Rivas, M Raja, A Pinsky, B Sutton, S Watson, N Amar, D Ashley, E Bierman, R Cappello, L Christle, J De Jong, H Delaneau, Olivier Desouza, F Farh, K Febbo, P Fernández-Viña, M Gorzynski, J Hammond, N Ioannidis, A Joshi, R Kamm, J Kirillova, A Kistler, A Mallempati, K Montero-Martin, G Neff, N Osoegawa, K Palacios, J Parikh, V Rubinacci, Simone Sahoo, M Salzman, J Schroth, G Seo, K Shoura, M Tanigawa, Y Wheeler, M
Source	MedRxiv; Medline
abstract	During COVID19 and other viral pandemics, rapid generation of host and pathogen genomic data is critical to tracking infection and informing therapies. There is an urgent need for efficient approaches to this data generation at scale. We have developed a scalable, high throughput approach to generate high fidelity low pass whole genome and HLA sequencing, viral genomes, and representation of human transcriptome from single nasopharyngeal swabs of COVID19 patients.
has issue date	2020-07-29(xsd:dateTime)
bibo:doi	10.1101/2020.07.27.20163147
bibo:pmid	32766602
has license	medrxiv
sha1sum (hex)	50fc688bfd758f6bf747c27306af94d21251f320
schema:url	https://doi.org/10.1101/2020.07.27.20163147
resource representing a document's title	High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs
has PubMed identifier	32766602
schema:publication	medRxiv : the preprint server for health sciences
resource representing a document's body	covid:50fc688bfd758f6bf747c27306af94d21251f320#body_text
is schema:about of	named entity 'scalable' named entity 'high fidelity' named entity 'viral' named entity 'rapid' named entity 'viral genomes' named entity 'HLA' named entity 'REPRESENTATION' named entity 'HIGH' named entity 'LOW' named entity 'GENERATE' named entity 'INFECTION' named entity 'EFFICIENT' named entity 'SINGLE' named entity 'host' named entity 'representation' named entity 'infection' named entity 'There' named entity 'throughput' named entity 'genomic' named entity 'high throughput' named entity 'nasopharyngeal swabs' named entity 'Gibbs sampling' named entity 'viral genomes' named entity 'DNA sequence assembly' named entity 'primers' named entity '50 million' named entity 'genotype' named entity 'Illumina Inc.' named entity 'autosomal' named entity 'RNA' named entity 'splicing' named entity 'transcriptome' named entity 'RefSeq' named entity 'genomes' named entity 'viral genome' named entity 'transcriptome' named entity 'virus' named entity 'RNA' named entity 'correlation' named entity 'peer review' named entity 'algorithm'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software