About: Co-Circulation of Canine Coronavirus I and IIa/b with High Prevalence and Genetic Diversity in Heilongjiang Province, Northeast China

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About: Co-Circulation of Canine Coronavirus I and IIa/b with High Prevalence and Genetic Diversity in Heilongjiang Province, Northeast China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Co-Circulation of Canine Coronavirus I and IIa/b with High Prevalence and Genetic Diversity in Heilongjiang Province, Northeast China
Creator	Feng, Li Geng, Yufei Guo, Donghua Li, Chunqiu Liu, Qiujin Su, Mingjun Sun, Dongbo Wang, Enyu Wang, Xinyu Wang, Zhihui Wei, Shan Zhang, Siyao Zhao, Xiwen Li, Wang Geng, Wei
Source	Medline; PMC
abstract	To trace the evolution of canine coronavirus (CCoV), 201 stool samples from diarrheic dogs in northeast China were subjected to reverse transcription-polymerase chain reactions (RT-PCRs) targeting the partial M and S genes of CCoV, followed by an epidemiological analysis. M gene RT-PCRs showed that 28.36% (57/201) of the samples were positive for CCoV; of the 57 positive samples, CCoV-I and CCoV-II accounted for 15.79% (9/57) and 84.21% (48/57), respectively. A sequence comparison of the partial M gene revealed nucleotide homologies of 88.4%–100% among the 57 CCoV strains, and 88.7%–96.2% identity between the 57 CCoV strains and the Chinese reference strain HF3. The CCoV-I and CCoV-II strains exhibited genetic diversity when compared with reference strains from China and other countries. The 57 CCoV strains exhibited high co-infection rates with canine kobuvirus (CaKV) (33.33%) and canine parvovirus-2 (CPV-2) (31.58%). The CCoV prevalence in diarrheic dogs differed significantly with immunization status, regions, seasons, and ages. Moreover, 28 S genes were amplified from the 57 CCoV-positive samples, including 26 CCoV-IIa strains, one CCoV-IIb strain, and one CCoV-I strain. A sequence comparison of the partial S gene revealed 86.3%–100% nucleotide identity among the 26 CCoV-IIa strains, and 89.6%–92.2% identity between the 26 CCoV-IIa strains and the Chinese reference strain V1. The 26 CCoV-IIa strains showed genetic diversity when compared with reference strains from China and other countries. Our data provide evidence that CCoV-I, CCoV-IIa, and CCoV-IIb strains co-circulate in the diarrhoetic dogs in northeast China, high co-infection rates with CaKV and CPV-2 were observed, and the CCoV-II strains exhibited high prevalence and genetic diversity.
has issue date	2016-01-15(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0146975
bibo:pmid	26771312
has license	cc-by
sha1sum (hex)	52babe7e5a33e5c40aab00ea9b3e0ff4a3dfa3ba
schema:url	https://doi.org/10.1371/journal.pone.0146975
resource representing a document's title	Co-Circulation of Canine Coronavirus I and IIa/b with High Prevalence and Genetic Diversity in Heilongjiang Province, Northeast China
has PubMed Central identifier	PMC4714894
has PubMed identifier	26771312
schema:publication	PLoS One
resource representing a document's body	covid:52babe7e5a33e5c40aab00ea9b3e0ff4a3dfa3ba#body_text
is schema:about of	named entity 'CHINA' named entity 'GENETIC DIVERSITY' named entity 'OUR' named entity 'HIGH PREVALENCE' named entity 'IIB' named entity 'CPV' named entity 'IDENTITY' named entity 'STRAIN' named entity 'NUCLEOTIDE' named entity 'GENETIC DIVERSITY' named entity 'REFERENCE' named entity 'SEASONS' named entity 'COUNTRIES' named entity 'REVERSE TRANSCRIPTION' named entity 'PREVALENCE' named entity 'CANINE KOBUVIRUS' named entity 'TRACE' named entity 'FOLLOWED BY' named entity 'INCLUDING' named entity 'ANALYSIS' named entity '2857' named entity 'POSITIVE FOR' named entity 'PARTIAL' named entity 'STRAINS' named entity 'HF3' named entity 'AGES' named entity 'OBSERVED' named entity 'PROVIDE' named entity 'HIGH' named entity 'AMPLIFIED' named entity 'DOGS' named entity 'NORTHEAST' named entity 'CHINA' named entity 'EVIDENCE' named entity '100%' named entity 'EVOLUTION' named entity 'RATES' named entity 'GENE' named entity 'SEQUENCE COMPARISON' named entity 'HEILONGJIANG PROVINCE' named entity 'NORTHEAST' named entity 'CANINE PARVOVIRUS' named entity 'POSITIVE' named entity 'SAMPLES' named entity 'TARGETING' named entity 'REVEALED' named entity 'IMMUNIZATION STATUS' named entity 'DATA' named entity 'CANINE CORONAVIRUS' named entity 'IIA' named entity 'COMPARED' named entity 'REGIONS' named entity 'POLYMERASE CHAIN REACTIONS' named entity 'GENES' named entity 'CHINESE' named entity 'CO-INFECTION' named entity 'CIRCULATE' named entity 'M GENE' named entity 'EPIDEMIOLOGICAL' named entity 'STOOL' covid:arg/52babe7e5a33e5c40aab00ea9b3e0ff4a3dfa3ba named entity 'evolution' named entity 'genetic diversity' named entity 'genetic diversity' named entity 'immunization' named entity 'co-infection' named entity 'sequence comparison'

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