About: Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle

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About: Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle
Creator	Li, · Cao, Zheng Hang, Xiaoying Lyu, Sunjian Shi, Weida Wu, Yinglei Zhang, Haiqi Yuan, ·
Source	Medline; PMC
abstract	Trionyx sinensis hemorrhagic syndrome virus (TSHSV) is a newly discovered lethal arterivirus that causes serious disease in Trionyx sinensis in China. In this study, the complete genome sequence of TSHSV was determined by RACE cloning, and the functions of the predicted proteins were predicted. The complete genome of TSHSV was found to be 17,875 bp in length, and a 3’-end poly(A) tail was detected. Eight TSHSV hypothetical proteins (TSHSV-HPs) were predicted by gene model identification. TSHSV-HP2, 3 and 4 were associated with replicase activity, since papain-like protease (PLPs), serine-type endopeptidase, P-loop-containing nucleoside triphosphate hydrolase, and EndoU-like endoribonuclease motifs were detected. Phylogenetic analysis showed that TSHSV clusters with an arterivirus from a Chinese broad-headed pond turtle.
has issue date	2019-07-03(xsd:dateTime)
bibo:doi	10.1007/s00705-019-04324-8
bibo:pmid	31270606
has license	no-cc
sha1sum (hex)	5d53384b0c11ff23069b94ba9f1c458627382a32
schema:url	https://doi.org/10.1007/s00705-019-04324-8
resource representing a document's title	Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle
has PubMed Central identifier	PMC7087228
has PubMed identifier	31270606
schema:publication	Arch Virol
resource representing a document's body	covid:5d53384b0c11ff23069b94ba9f1c458627382a32#body_text
is schema:about of	named entity 'complete' named entity 'discovered' named entity 'TRIONYX SINENSIS HEMORRHAGIC SYNDROME VIRUS' named entity 'HYPOTHETICAL' named entity 'ARTERIVIRUS' named entity 'DISEASE' named entity 'GENE' named entity 'PREDICTED' named entity 'NEWLY DISCOVERED' named entity 'CONTAINING' named entity 'STUDY' named entity 'ENDOU' named entity 'LETHAL' named entity 'CHINA' named entity 'MODEL' named entity 'GENOME' named entity 'DETECTED' named entity 'ACTIVITY' named entity 'CAUSES' named entity 'ASSOCIATED WITH' named entity 'GENOME SEQUENCE' named entity 'PAPAIN' named entity 'TRIONYX SINENSIS' named entity 'NEW' named entity '28A' named entity 'NUCLEOSIDE TRIPHOSPHATE' named entity 'RACE' named entity 'AMPLIFIED' named entity 'CHINESE SOFTSHELL TURTLE' named entity 'INFECTED' named entity 'ARTERIVIRUS' named entity 'ANALYSIS' named entity 'DETERMINED BY' named entity 'LENGTH' named entity 'CLONING' named entity 'COMPLETE' named entity 'END' named entity 'LETHAL' named entity 'IS A' named entity 'MOTIFS' named entity 'ENDORIBONUCLEASE' named entity 'HP2' named entity 'GENOME SEQUENCE' named entity 'LOOP' named entity 'POLY' named entity 'CHINESE' named entity 'LIKE' named entity 'FOUND' named entity 'PROTEINS' named entity 'HYDROLASE' named entity 'TAIL' named entity 'CLUSTERS' named entity 'COMPLETE' named entity 'TRIONYX SINENSIS HEMORRHAGIC SYNDROME VIRUS' named entity 'BROAD' named entity 'IDENTIFICATION' named entity 'HPS' named entity 'POND TURTLE' named entity 'PROTEASE' named entity 'ENDOPEPTIDASE' named entity 'REPLICASE' named entity 'PHYLOGENETIC ANALYSIS' named entity 'FUNCTIONS' named entity 'motifs' named entity 'nucleoside triphosphate' named entity 'arterivirus' named entity 'sequence' named entity 'activity' named entity 'hemorrhagic' named entity 'functions' named entity 'genome' named entity 'hydrolase' named entity 'nucleoside triphosphate' named entity '3'-end'

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