About: Analysis of a QX-like avian infectious bronchitis virus genome identified recombination in the region containing the ORF 5a, ORF 5b, and nucleocapsid protein gene sequences

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About: Analysis of a QX-like avian infectious bronchitis virus genome identified recombination in the region containing the ORF 5a, ORF 5b, and nucleocapsid protein gene sequences Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Analysis of a QX-like avian infectious bronchitis virus genome identified recombination in the region containing the ORF 5a, ORF 5b, and nucleocapsid protein gene sequences
Creator	Huang, Yong Liu, Ping Wang, Fuyan Zou, Nianli Guo, Mingping Sanjie, Wen Xintian, • Zhao, Fangfang
Source	Medline; PMC
abstract	The complete genome of a QX-like infectious bronchitis virus (IBV) strain Sczy3 isolated recently in Sichuan was sequenced. The genome contains 27,695 nucleotides (nt), and possesses a genomic structure similar to other IBV strains. Sequence comparisons demonstrated that the Sczy3 genome had the highest nt sequence identity with QX-like IBVs and was most dissimilar to the Massachusetts type IBV. Differences in the sequences of genes present in the Sczy3 genome and other IBVs gene sequences were also identified. Phylogenic analysis showed that the entire genome and most of the Sczy3 genes were located in the same cluster as LX4. Recombination analysis showed that Sczy3 is a chimeric strain derived from LX4 (major parental sequence) and H120 (minor parental sequence) suggesting that recombination occurred in a region containing the 3′ terminal 5a sequence (83 nt), the 5′ terminal 5b sequence (222 nt), and the 5′ terminal nucleocapsid protein gene sequence (132 nt). Mutations and intergenic recombination may have played an important role in the evolution of IBVs.
has issue date	2013-01-26(xsd:dateTime)
bibo:doi	10.1007/s11262-013-0884-4
bibo:pmid	23355072
has license	no-cc
sha1sum (hex)	66d3cedc2c96821e0f3a6ad9897c769fb15b2d61
schema:url	https://doi.org/10.1007/s11262-013-0884-4
resource representing a document's title	Analysis of a QX-like avian infectious bronchitis virus genome identified recombination in the region containing the ORF 5a, ORF 5b, and nucleocapsid protein gene sequences
has PubMed Central identifier	PMC7089284
has PubMed identifier	23355072
schema:publication	Virus Genes
resource representing a document's body	covid:66d3cedc2c96821e0f3a6ad9897c769fb15b2d61#body_text
is schema:about of	named entity 'PROTEIN GENE' named entity 'nucleocapsid' named entity 'major' named entity 'virus' named entity 'protein' named entity 'GENOME' named entity 'HIGHEST' named entity 'INTERGENIC' named entity 'IDENTIFIED' named entity 'DERIVED' named entity 'SEQUENCES' named entity 'STRAINS' named entity 'LOCATED IN' named entity 'COMPLETE' named entity 'RECOMBINATION' named entity 'REGION' named entity 'CHIMERIC' named entity 'MOST OF' named entity 'MAY HAVE' named entity 'CLUSTER' named entity 'GENOMIC STRUCTURE' named entity 'OCCURRED' named entity 'GENE' named entity 'PROTEIN GENE' named entity 'ANALYSIS' named entity 'LIKE' named entity 'ORF' named entity 'DEMONSTRATED' named entity 'NUCLEOCAPSID PROTEIN' named entity 'AVIAN INFECTIOUS BRONCHITIS VIRUS' named entity 'NUCLEOCAPSID PROTEIN' named entity 'SEQUENCES' named entity 'CONTAINING' named entity 'REGION' named entity 'GENES' named entity 'MASSACHUSETTS' named entity 'SEQUENCE' named entity 'ROLE' named entity 'RECOMBINATION' named entity 'ANALYSIS' named entity 'EVOLUTION' named entity 'IDENTIFIED' named entity 'CONTAINING' named entity 'TERMINAL' named entity 'MUTATIONS' named entity 'SEQUENCE IDENTITY' named entity 'TYPE' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'IMPORTANT' named entity 'GENOME' named entity 'LIKE' named entity 'ENTIRE' named entity 'PLAYED' named entity 'DISSIMILAR' named entity 'PARENTAL' named entity 'CONTAINS' named entity '28132' named entity 'IS A' named entity 'ISOLATED' named entity 'POSSESSES' named entity 'SIMILAR' named entity 'STRAIN' named entity 'NUCLEOTIDES' named entity 'RECENTLY' named entity 'PRESENT' covid:arg/66d3cedc2c96821e0f3a6ad9897c769fb15b2d61 named entity 'type' named entity 'gene' named entity 'gene' named entity 'genomic structure' named entity 'derived' named entity 'genome' named entity 'diethylpyrocarbonate' named entity 'reverse transcriptase'

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