About: Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds

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About: Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds
Creator	Wille, Michelle Klaassen, Marcel Alexandersen, Soren Chamings, Anthony Vibin, Jessy Nelson, Tiffanie
Source	Medline; PMC
abstract	We evaluated the presence of coronaviruses by PCR in 918 Australian wild bird samples collected during 2016–17. Coronaviruses were detected in 141 samples (15.3%) from species of ducks, shorebirds and herons and from multiple sampling locations. Sequencing of selected positive samples found mainly gammacoronaviruses, but also some deltacoronaviruses. The detection rate of coronaviruses was improved by using multiple PCR assays, as no single assay could detect all coronavirus positive samples. Sequencing of the relatively conserved Orf1 PCR amplicons found that Australian duck gammacoronaviruses were similar to duck gammacoronaviruses around the world. Some sequenced shorebird gammacoronaviruses belonged to Charadriiformes lineages, but others were more closely related to duck gammacoronaviruses. Australian duck and heron deltacoronaviruses belonged to lineages with other duck and heron deltacoronaviruses, but were almost 20% different in nucleotide sequence to other deltacoronavirus sequences available. Deltacoronavirus sequences from shorebirds formed a lineage with a deltacoronavirus from a ruddy turnstone detected in the United States. Given that Australian duck gammacoronaviruses are highly similar to those found in other regions, and Australian ducks rarely come into contact with migratory Palearctic duck species, we hypothesise that migratory shorebirds are the important vector for moving wild bird coronaviruses into and out of Australia.
has issue date	2018-04-13(xsd:dateTime)
bibo:doi	10.1038/s41598-018-24407-x
bibo:pmid	29654248
has license	cc-by
sha1sum (hex)	6aae752380943069e39342f1d86741124211c312
schema:url	https://doi.org/10.1038/s41598-018-24407-x
resource representing a document's title	Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds
has PubMed Central identifier	PMC5899083
has PubMed identifier	29654248
schema:publication	Sci Rep
resource representing a document's body	covid:6aae752380943069e39342f1d86741124211c312#body_text
is schema:about of	named entity 'CORONAVIRUSES' named entity 'deltacoronavirus' named entity 'bird' named entity 'coronaviruses' named entity 'selected' named entity 'coronaviruses' named entity 'non-migratory' named entity 'DETECTION' named entity 'AUSTRALIAN' named entity 'COLLECTED' named entity 'CHARADRIIFORMES' covid:arg/6aae752380943069e39342f1d86741124211c312 named entity 'FORMED' named entity 'HERONS' named entity 'ALMOST' named entity 'DIFFERENT' named entity 'DUCKS' named entity 'DETECT' named entity 'LOCATIONS' named entity 'CORONAVIRUSES' named entity 'RELATED' named entity 'SAMPLING' named entity 'MIGRATORY' named entity 'WILD BIRD' named entity 'DELTACORONAVIRUS' named entity 'SELECTED' named entity 'WORLD' named entity 'RUDDY TURNSTONE' named entity 'VECTOR' named entity 'SPECIES' named entity 'PCR' named entity 'RATE' named entity 'LINEAGE' named entity 'SEQUENCING' named entity 'WILD' named entity 'HIGHLY' named entity 'UNITED STATES' named entity 'REGIONS' named entity 'BIRDS' named entity 'NON-' named entity 'MULTIPLE' named entity 'FOUND' named entity '918' named entity 'SAMPLES' named entity '20%' named entity '141' named entity 'POSITIVE' named entity 'COME' named entity 'NUCLEOTIDE SEQUENCE' named entity 'MIGRATORY' named entity 'RARELY' named entity 'ASSAY' named entity 'ORF1' named entity 'PALEARCTIC' named entity 'AVAILABLE' named entity 'DETECTED' named entity 'SINGLE' named entity 'BUT' named entity 'SEQUENCES' named entity 'DETECTION' named entity 'MOVING' named entity 'CONSERVED' named entity 'CONTACT WITH' named entity 'PRESENCE OF' named entity 'IMPROVED BY' named entity 'SIMILAR' named entity 'IMPORTANT' named entity 'CORONAVIRUS' named entity 'DUCK' named entity 'EVALUATED' named entity 'GIVEN' named entity 'USING' named entity 'AUSTRALIAN' named entity 'HERON' named entity 'AUSTRALIA' named entity 'heron'

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