About: Every fifth published metagenome is not available to science

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Every fifth published metagenome is not available to science
Creator	Berendonk, Thomas Cytryn, Eddie Fatta-Kassinos, Despo Bü Rgmannid, Helmut Udikovic-Kolic, Nikolina Cornoid, Gianluca Di, Andrea Eckertid, Ester Fontanetoid, Diego Franzettiid, Andrea Larssonid, D Manaia, Lia Prudenid, Amy Singerid, Andrew
source	Medline; PMC
abstract	Have you ever sought to use metagenomic DNA sequences reported in scientific publications? Were you successful? Here, we reveal that metagenomes from no fewer than 20% of the papers found in our literature search, published between 2016 and 2019, were not deposited in a repository or were simply inaccessible. The proportion of inaccessible data within the literature has been increasing year-on-year. Noncompliance with Open Data is best predicted by the scientific discipline of the journal. The number of citations, journal type (e.g., Open Access or subscription journals), and publisher are not good predictors of data accessibility. However, many publications in high–impact factor journals do display a higher likelihood of accessible metagenomic data sets. Twenty-first century science demands compliance with the ethical standard of data sharing of metagenomes and DNA sequence data more broadly. Data accessibility must become one of the routine and mandatory components of manuscript submissions—a requirement that should be applicable across the increasing number of disciplines using metagenomics. Compliance must be ensured and reinforced by funders, publishers, editors, reviewers, and, ultimately, the authors.
has issue date	2020-04-03(xsd:dateTime)
bibo:doi	10.1371/journal.pbio.3000698
bibo:pmid	32243442
has license	cc0
sha1sum (hex)	713a4d598b778b6cce132a64763e0471241962c3
schema:url	https://doi.org/10.1371/journal.pbio.3000698
resource representing a document's title	Every fifth published metagenome is not available to science
has PubMed Central identifier	PMC7159239
has PubMed identifier	32243442
schema:publication	PLoS Biol
resource representing a document's body	covid:713a4d598b778b6cce132a64763e0471241962c3#body_text
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