About: Tracking the Origin and Deciphering the Phylogenetic Relationship of Porcine Epidemic Diarrhea Virus in Ecuador

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About: Tracking the Origin and Deciphering the Phylogenetic Relationship of Porcine Epidemic Diarrhea Virus in Ecuador Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Tracking the Origin and Deciphering the Phylogenetic Relationship of Porcine Epidemic Diarrhea Virus in Ecuador
Creator	Barrera, Maritza Acosta-Batallas, Alfredo Garrido-Haro, Ana Granda, Danilo Pérez, Lester Vaca, María
Source	Medline; PMC
abstract	In 2010, new Chinese strains of porcine epidemic diarrhea virus (PEDV), clinically more severe than the classical strains, emerged. These strains were spread to United States in 2013 through an intercontinental transmission from China with further spreading across the world, evidencing the emergent nature of these strains. In the present study, an analysis of PEDV field sequences from Ecuador was conducted by comparing all the PEDV S gene sequences available in the GenBank database. Phylogenetic comparisons and Bayesian phylogeographic inference based on complete S gene sequences were also conducted to track the origin and putative route of PEDV. The sequence from the PED-outbreak in Ecuador was grouped into the clade II of PEDV genogroup 2a together with other sequences of isolates from Mexico, Canada, and United States. The phylogeographic study revealed the emergence of the Chinese PEDV strains, followed by spreading to US in 2013, from US to Korea, and later the introduction of PEDV to Canada, Mexico, and Ecuador directly from the US. The sources of imports of live swine in Ecuador in 2014 were mainly from Chile and US. Thus, this movement of pigs is suggested as the main way for introducing PEDV to Ecuador.
has issue date	2017-12-12(xsd:dateTime)
bibo:doi	10.1155/2017/2978718
bibo:pmid	29379796
has license	cc-by
sha1sum (hex)	71afb4cf84163bef90c7ea2f8d816aef07582d85
schema:url	https://doi.org/10.1155/2017/2978718
resource representing a document's title	Tracking the Origin and Deciphering the Phylogenetic Relationship of Porcine Epidemic Diarrhea Virus in Ecuador
has PubMed Central identifier	PMC5742880
has PubMed identifier	29379796
schema:publication	Biomed Res Int
resource representing a document's body	covid:71afb4cf84163bef90c7ea2f8d816aef07582d85#body_text
is schema:about of	named entity 'ECUADOR' named entity 'gene' named entity 'phylogeographic' named entity 'Ecuador' named entity 'COMPLETE' named entity 'TO TRACK' named entity 'NATURE' named entity 'STRAINS' named entity 'CHINESE' named entity 'ROUTE' named entity 'NEW' named entity 'PORCINE EPIDEMIC DIARRHEA VIRUS' named entity 'COMPARING' named entity 'AVAILABLE' named entity 'BASED' named entity 'CHINA' named entity 'UNITED STATES' named entity 'ANALYSIS' named entity 'SPREAD' named entity 'INTERCONTINENTAL' named entity 'INFERENCE' named entity 'ORIGIN' named entity 'OTHER SEQUENCES' named entity 'CANADA' named entity 'ORIGIN' named entity 'TRACKING' named entity 'MEXICO' named entity 'ACROSS' named entity 'PHYLOGENETIC RELATIONSHIP' named entity 'PORCINE EPIDEMIC DIARRHEA VIRUS' named entity 'DATABASE' named entity 'SPREADING' named entity 'THESE' named entity 'WORLD' named entity 'SEVERE' named entity 'EMERGENT' named entity 'PED' named entity 'ECUADOR' named entity 'SEQUENCES' named entity 'CLADE' named entity 'GROUPED' named entity 'FIELD' named entity 'GENBANK' named entity 'TRANSMISSION' named entity 'PRESENT' named entity 'ISOLATES' named entity 'STUDY' named entity 'CLASSICAL' named entity 'SEQUENCE' named entity 'OUTBREAK' named entity 'GENE' named entity 'transmission' named entity 'clade' named entity 'grouped' named entity 'strains' named entity 'route' named entity 'sequences' named entity 'Canada' named entity 'Bayesian' named entity 'Phylogenetic' named entity 'Mexico' named entity 'phylogeographic' named entity 'China' named entity 'United States' named entity 'Ecuador' named entity 'Porcine Epidemic Diarrhea Virus' named entity 'strains' named entity 'nsp3' named entity 'Colorado' named entity 'Ecuador' named entity 'Austria' named entity 'virus' named entity 'phylogenetic tree' named entity 'Bayes factor' named entity 'epidemiological' named entity 'PEDV'

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