About: Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens
Creator	Asfour, Tarek Collins, Alex Cotur, Yasin Grell, Max Güder, Firat Kaisti, Matti Kasimatis, Michael Nunez-Bajo, Estefania Senesi, Guglielmo Stevenson, Karen Tanriverdi, Ugur
Source	BioRxiv
abstract	Rapid screening and low-cost diagnosis play a crucial role in choosing the correct course of intervention e.g., drug therapy, quarantine, no action etc. when dealing with highly infectious pathogens. This is especially important if the disease-causing agent has no effective treatment, such as the novel coronavirus SARS-CoV-2 (the pathogen causing COVID-19), and shows no or similar symptoms to other common infections. We report a silicon-based integrated Point-of-Need (PoN) transducer (TriSilix) that can chemically-amplify and detect pathogen-specific sequences of nucleic acids (NA) quantitatively in real-time. Unlike other silicon-based technologies, TriSilix can be produced at wafer-scale in a standard laboratory; we have developed a series of methodologies based on metal-assisted chemical (wet) etching, electroplating, thermal bonding and laser-cutting to enable a cleanroom-free low-cost fabrication that does not require processing in an advanced semiconductor foundry. TriSilix is, therefore, resilient to disruptions in the global supply chain as the devices can be produced anywhere in the world. To create an ultra-low-cost device, the architecture proposed exploits the intrinsic properties of silicon and integrates three modes of operation in a single chip: i) electrical (Joule) heater, ii) temperature sensor (i.e. thermistor) with a negative temperature coefficient that can provide the precise temperature of the sample solution during reaction and iii) electrochemical sensor for detecting target NA. Using TriSilix, the sample solution can be maintained at a single, specific temperature (needed for isothermal amplification of NA such as Recombinase Polymerase Amplification (RPA) or cycled between different temperatures (with a precision of ±1.3°C) for Polymerase Chain Reaction (PCR) while the exact concentration of amplicons is measured quantitatively and in real-time electrochemically. A single 4-inch Si wafer yields 37 TriSilix chips of 10×10×0.65 mm in size and can be produced in 7 hours, costing ~US $0.35 per device. The system is operated digitally, portable and low power – capable of running up to 35 tests with a 4000 mAh battery (a typical battery capacity of a modern smartphone). We were able to quantitatively detect a 563-bp fragment (Insertion Sequence IS900) of the genomic DNA of M. avium subsp. paratuberculosis (extracted from cultured field samples) through PCR in real-time with a Limit-of-Detection of 20 fg, equivalent to a single bacterium, at the 30th cycle. Using TriSilix, we also detected the cDNA from SARS-CoV-2 (1 pg), through PCR, with high specificity against SARS-CoV (2003).
has issue date	2020-03-25(xsd:dateTime)
bibo:doi	10.1101/2020.03.23.002931
has license	biorxiv
sha1sum (hex)	742253bd752389ca0848edbbe4cdb0ea19a6c0a0
schema:url	https://doi.org/10.1101/2020.03.23.002931
resource representing a document's title	Ultra-Low-Cost Integrated Silicon-based Transducer for On-Site, Genetic Detection of Pathogens
schema:publication	bioRxiv
resource representing a document's body	covid:742253bd752389ca0848edbbe4cdb0ea19a6c0a0#body_text
is schema:about of	named entity 'device' named entity 'integrated' named entity 'system' named entity 'COVID-19' named entity 'pathogen' named entity 'screening' named entity 'integrates' named entity 'etching' named entity 'concentration' named entity 'wafer' named entity 'coronavirus' named entity 'Genetic' named entity 'electrochemical' named entity 'operation' named entity 'costing' named entity 'action' named entity 'processing' named entity 'inch' named entity 'needed' named entity 'reaction' named entity 'temperature' named entity 'create' named entity 'typical' named entity 'amplicons' named entity 'target' named entity 'quarantine' named entity 'operated' named entity 'quantitatively' named entity 'modern' named entity 'silicon-based' named entity 'silicon' named entity 'Joule' named entity 'cleanroom' named entity 'PCR' named entity 'RPA' named entity 'PCR' named entity 'silicon' named entity 'qPCR' named entity 'genome' named entity 'MATLAB' named entity 'electrical resistance' named entity 'incubation' named entity 'molecular methods' named entity 'non-genetic' named entity 'cold-chain' named entity 'variable resistor' named entity 'fluorescent labels' named entity 'laboratory instrument' named entity 'redox' named entity 'redox-active' named entity 'isothermal' named entity 'laser' named entity 'silicon foundry' named entity 'semiconductor foundries' named entity 'temperature sensor' named entity 'potentiostat' named entity 'lysis' named entity 'thermal bonding' named entity 'cleanroom' named entity 'electrochemical cell' named entity 'PCR' named entity 'negative temperature coefficient' named entity '3D printed' named entity 'oxidation' named entity 'nucleic acids' named entity 'control loop' named entity 'bacteria' named entity 'sensor' named entity 'infectious diseases' named entity 'microfabrication' named entity 'solvent' named entity 'reverse transcription' named entity 'PBS' named entity 'redox-active'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2024 OpenLink Software