About: Insectivorous bats carry host specific astroviruses and coronaviruses across different regions in Germany

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Insectivorous bats carry host specific astroviruses and coronaviruses across different regions in Germany
Creator	Balkema-Buschmann, Anne Fischer, Kerstin Haase, Martin Kerth, Gerald Kwasnitschka, Linda Zeus, Veronika Groschup, Martin
Source	Elsevier; Medline; PMC
abstract	Recently several infectious agents with a zoonotic potential have been detected in different bat species. However, there is still a lack of knowledge on the transmission dynamics within and between bat species, as well as from bats to other mammals. To better understand these processes, it is important to compare the phylogenetic relationships between different agents to that of their respective hosts. In this study, we analysed more than 950 urine, faeces and oral swab samples collected from 653 bats from mainly four species (Myotis nattereri, Myotis bechsteinii, Myotis daubentonii, and Plecotus auritus) for the presence of coronavirus, paramyxovirus and astrovirus related nucleic acids located in three different regions of Germany. Using hemi-nested reverse transcriptase (RT)-PCR amplification of fragments within the highly conserved regions of the respective RNA dependent RNA polymerase (RdRp) genes, we detected astrovirus sequences at an overall detection rate of 25.8% of the analysed animals, with a maximum of 65% in local populations. The detection rates for coronaviruses and paramyxoviruses were distinctly lower, ranging between 1.4% and 3.1%. Interestingly, the sequence similarities in samples collected from the same bat species in different geographical areas were distinctly larger than the sequence similarities between samples from different species sampled at the same location. This indicates that host specificity may be more important than host ecology for the presence of certain viruses in bats.
has issue date	2015-11-14(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2015.11.010
bibo:pmid	26584511
has license	no-cc
sha1sum (hex)	7c865720daa05131ffead022ca3f59e074cc914f
schema:url	https://doi.org/10.1016/j.meegid.2015.11.010
resource representing a document's title	Insectivorous bats carry host specific astroviruses and coronaviruses across different regions in Germany
has PubMed Central identifier	PMC7106178
has PubMed identifier	26584511
schema:publication	Infect Genet Evol
resource representing a document's body	covid:7c865720daa05131ffead022ca3f59e074cc914f#body_text
is schema:about of	named entity 'agents' named entity 'zoonotic' named entity 'maximum' named entity 'RNA dependent RNA polymerase' named entity 'location' named entity 'bats' named entity 'Germany' named entity 'REGIONS' named entity 'BATS' named entity 'LARGER' named entity 'HIGHLY' named entity 'LOCAL' named entity 'ANIMALS' named entity 'DETECTED' named entity 'HOSTS' named entity 'ZOONOTIC' named entity 'LOWER' named entity 'SAMPLES' named entity 'INFECTIOUS AGENTS' named entity '3.1' named entity 'CORONAVIRUS' named entity 'REVERSE TRANSCRIPTASE' named entity 'SPECIES' named entity '1.4' named entity 'TRANSMISSION' named entity 'MAXIMUM' named entity 'PRESENCE OF' named entity 'STUDY' named entity 'REGIONS' named entity 'POPULATIONS' named entity 'PROCESSES' named entity 'BATS' named entity 'HEMI' named entity 'LOCATION' named entity 'RATE' named entity 'SEQUENCES' named entity 'CONSERVED' named entity 'KNOWLEDGE' named entity 'SPECIFIC' named entity 'CORONAVIRUSES' named entity 'THESE' named entity 'PCR AMPLIFICATION' named entity 'LACK' named entity 'HOST' named entity 'ACROSS' named entity 'DIFFERENT' named entity 'HOST SPECIFICITY' named entity 'RELATIONSHIPS' named entity 'NESTED' named entity 'NUCLEIC ACIDS' named entity 'MYOTIS BECHSTEINII' named entity 'ORAL SWAB' named entity 'CARRY' named entity 'ASTROVIRUSES' named entity 'GERMANY' named entity 'COLLECTED' named entity 'VIRUSES' named entity 'USING' named entity 'CORONAVIRUSES' named entity 'IMPORTANT' named entity 'MORE THAN' named entity 'HOST' named entity 'DETECTION' named entity 'URINE' named entity 'GEOGRAPHICAL' named entity 'RNA DEPENDENT RNA POLYMERASE' named entity 'MAMMALS' named entity 'CERTAIN' named entity 'UNDERSTAND' named entity 'TO COMPARE' named entity 'FRAGMENTS' named entity 'FAECES' named entity '950' named entity 'MYOTIS DAUBENTONII' named entity 'PLECOTUS AURITUS'

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