About: Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data

Facets (new session)
Description
Metadata
Settings
- owl:sameAs
- Inference Rule:

About: Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data
Creator	Chen, Ze Gao, Shan Xu, Xiaofeng Barker, Stephen Bei 23$, Jinlong Chen, Defu Chen, Jianyuan He, Bingjun Kelava, Samuel Xuan, Yibo
source	BioRxiv
abstract	In 2014, A novel tick-borne virus of the genus Flavivirus was first reported from the Mogiana region in Brazil. This virus was named the Mogiana tick virus (MGTV). Later, MGTV was also named as Jingmen tick virus (JMTV), Kindia tick virus (KDTV), Guangxi tick virus (GXTV) etc. In the present study, we used small RNA sequencing (sRNA-seq) to detect viruses in ticks and detected MGTV in Amblyomma testudinarium ticks, which had been captured in Yunnan province of China in the year of 2016. The full-length genome sequence of a new MGTV strain Yunnan2016 (GenBank: MT080097, MT080098, MT080099 and MT080100) was obtained and recommended to be included into the NCBI RefSeq database for the future studies of MGTV. Our phylogenetic analyses showed that viruses named MGTV, JMTV, KDTV and GXTV are monophyletic: the MGTV group (lineage) of viruses. We show, for the first time, that 5′ and 3′ sRNAs can be used to obtain full-length sequences of the 5’ and 3’ ends of, but not limited to genome sequences of RNA viruses. And we proved the feasibility of using the sRNA-seq based method for the detection of viruses in a sample containing miniscule RNA.
has issue date	2020-03-25(xsd:dateTime)
bibo:doi	10.1101/2020.03.24.004796
has license	biorxiv
sha1sum (hex)	8a84509853b6b0d1306753cda0be31fdb8d6d58e
schema:url	https://doi.org/10.1101/2020.03.24.004796
resource representing a document's title	Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data
schema:publication	bioRxiv
resource representing a document's body	covid:8a84509853b6b0d1306753cda0be31fdb8d6d58e#body_text
is schema:about of	named entity 'Mogiana' named entity 'virus' named entity 'viruses' named entity 'Yunnan' named entity 'genome' named entity 'REGION' named entity 'OBTAINED' named entity 'MOGIANA TICK VIRUS' named entity 'NAMED' named entity 'ETC.' named entity 'KINDIA TICK VIRUS' covid:arg/8a84509853b6b0d1306753cda0be31fdb8d6d58e named entity 'genus' named entity 'KDTV' named entity 'viruses' named entity 'Mogiana' named entity 'virus' named entity 'phylogenetic' named entity 'virus' named entity 'MGTV' named entity 'Brazil' named entity 'tick' named entity 'GenBank' named entity 'Yunnan' named entity 'MGTV' named entity 'database' named entity 'Guangxi' named entity 'virus' named entity 'Mogiana' named entity 'KDTV' named entity 'Amblyomma testudinarium' named entity 'Kindia' named entity 'MGTV' named entity 'Flavivirus' named entity 'RNA virus' named entity 'sRNA' named entity 'reference genome' named entity 'viruses' named entity 'reference genome' named entity 'RNA' named entity 'Ticks' named entity 'genome sequences' named entity 'tick' named entity 'Guinea' named entity 'transcriptomics' named entity 'genome sequence' named entity 'Sanger sequence' named entity 'tick' named entity 'genome' named entity 'Genome' named entity 'NCBI' named entity 'contigs' named entity 'Bioconductor' named entity '3′ end' named entity 'Human Immunodeficiency Virus type 1' named entity 'sRNAs' named entity 'non-coding' named entity 'viruses' named entity 'Flavivirus' named entity 'clades' named entity 'MGTV' named entity 'Amblyomma testudinarium' named entity 'tick' named entity 'MGTV' named entity 'viruses' named entity 'sRNAs' named entity 'sRNA' named entity 'viruses' named entity 'HPV' named entity 'African Swine Fever Virus' named entity 'mitochondrial genes' named entity 'MGTV' named entity 'duplexes' named entity 'Boophilus' named entity 'reptiles'

Faceted Search & Find service v1.13.91 as of Mar 24 2020

Alternative Linked Data Documents: Sponger | ODE Content Formats:

RDF

ODATA

Microdata

About

OpenLink Virtuoso version 07.20.3229 as of Jul 10 2020, on Linux (x86_64-pc-linux-gnu), Single-Server Edition (94 GB total memory)
Data on this page belongs to its respective rights holders.
Virtuoso Faceted Browser Copyright © 2009-2025 OpenLink Software