About: Lipidomic study of intracellular Singapore grouper iridovirus

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Lipidomic study of intracellular Singapore grouper iridovirus
Creator	Chan, Robin Wenk, Markus Hew, Choy-Leong Wu, Jinlu
topic	covid:8e910db8a6a457e5b407a4667e8a4c5dfa8eaa28#this
Source	Elsevier; Medline; PMC
abstract	Abstract Singapore grouper iridoviruses (SGIV) infected grouper cells release few enveloped extracellular viruses by budding and many unenveloped intracellular viruses following cell lysis. The lipid composition and function of such unenveloped intracellular viruses remain unknown. Detergent treatment of the intracellular viruses triggered the loss of viral lipids, capsid proteins and infectivity. Enzymatic digestion of the viral lipids with phospholipases and sphingomyelinase retained the viral capsid proteins but reduced infectivity. Over 220 lipid species were identified and quantified from the viruses and its producer cells by electrospray ionization mass spectrometry. Ten caspid proteins that dissociated from the viruses following the detergent treatments were identified by MALDI-TOF/TOF-MS/MS. Five of them were demonstrated to be lipid-binding proteins. This is the first research detailing the lipidome and lipid–protein interactions of an unenveloped virus. The identified lipid species and lipid-binding proteins will facilitate further studies of the viral assembly, egress and entry.
has issue date	2010-04-10(xsd:dateTime)
bibo:doi	10.1016/j.virol.2010.01.016
bibo:pmid	20123143
has license	els-covid
sha1sum (hex)	8e910db8a6a457e5b407a4667e8a4c5dfa8eaa28
schema:url	https://doi.org/10.1016/j.virol.2010.01.016
resource representing a document's title	Lipidomic study of intracellular Singapore grouper iridovirus
has PubMed Central identifier	PMC7126382
has PubMed identifier	20123143
schema:publication	Virology
resource representing a document's body	covid:8e910db8a6a457e5b407a4667e8a4c5dfa8eaa28#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/8e910db8a6a457e5b407a4667e8a4c5dfa8eaa28
is schema:about of	named entity 'LIPIDOME' named entity 'MALDI-TOF' named entity 'TREATMENT' named entity 'RETAINED' named entity 'FOLLOWING' named entity 'DETERGENT' named entity 'GROUPER' named entity 'CELL LYSIS' named entity 'REDUCED' named entity 'VIRAL CAPSID' named entity 'SPECIES' named entity 'ENTRY' named entity 'ELECTROSPRAY IONIZATION MASS SPECTROMETRY' named entity 'LIPID' named entity 'UNKNOWN' named entity 'VIRAL ASSEMBLY' named entity 'IRIDOVIRUSES' named entity 'LOSS OF' named entity 'RESEARCH' named entity 'lipid' named entity 'budding' named entity 'intracellular' named entity 'enveloped' named entity 'intracellular' named entity 'Singapore' named entity 'STUDY' named entity 'INTRACELLULAR' named entity 'INFECTED' named entity 'INFECTIVITY' named entity 'SINGAPORE GROUPER IRIDOVIRUS' named entity 'SINGAPORE' named entity 'PHOSPHOLIPASES' named entity 'VIRUS' named entity 'BINDING PROTEINS' named entity 'EXTRACELLULAR' named entity 'ITS' named entity 'LIPIDS' named entity 'IDENTIFIED' named entity 'PROTEIN INTERACTIONS' named entity 'SPHINGOMYELINASE' named entity 'RELEASE' named entity 'TRIGGERED' named entity '220' named entity 'STUDIES' named entity 'VIRAL' named entity 'PRODUCER' named entity 'CAPSID PROTEINS' named entity 'TREATMENTS' named entity 'ENZYMATIC DIGESTION' named entity 'BUDDING' named entity 'FUNCTION' named entity 'INTRACELLULAR' named entity 'PROTEINS' named entity 'CELLS' named entity 'VIRUSES' named entity 'IDENTIFIED BY' named entity 'BUT' named entity 'LIPID COMPOSITION' named entity 'DISSOCIATED FROM' covid:arg/8e910db8a6a457e5b407a4667e8a4c5dfa8eaa28 named entity 'cells' named entity 'detailing' named entity 'detergent' named entity 'quantified' named entity 'lipids' named entity 'Enzymatic' named entity 'reduced' named entity 'intracellular' named entity 'extracellular' named entity 'viruses' named entity 'electrospray ionization mass spectrometry' named entity 'lipids' named entity 'lipid' named entity 'Detergent' named entity 'MALDI-TOF' named entity 'intracellular'

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