About: A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses

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About: A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses
Creator	Tse, Herman Maufrais, Corinne Bourhy, Hervé Dacheux, Laurent Vandenbogaert, Mathias Cervantes-Gonzalez, Minerva Guigon, Ghislaine Thiberge, Jean-Michel Rie Caro, Valé
Source	PMC
abstract	The prediction of viral zoonosis epidemics has become a major public health issue. A profound understanding of the viral population in key animal species acting as reservoirs represents an important step towards this goal. Bats harbor diverse viruses, some of which are of particular interest because they cause severe human diseases. However, little is known about the diversity of the global population of viruses found in bats (virome). We determined the viral diversity of five different French insectivorous bat species (nine specimens in total) in close contact with humans. Sequence-independent amplification, high-throughput sequencing with Illumina technology and a dedicated bioinformatics analysis pipeline were used on pooled tissues (brain, liver and lungs). Comparisons of the sequences of contigs and unassembled reads provided a global taxonomic distribution of virus-related sequences for each sample, highlighting differences both within and between bat species. Many viral families were present in these viromes, including viruses known to infect bacteria, plants/fungi, insects or vertebrates, the most relevant being those infecting mammals (Retroviridae, Herpesviridae, Bunyaviridae, Poxviridae, Flaviviridae, Reoviridae, Bornaviridae, Picobirnaviridae). In particular, we detected several new mammalian viruses, including rotaviruses, gammaretroviruses, bornaviruses and bunyaviruses with the identification of the first bat nairovirus. These observations demonstrate that bats naturally harbor viruses from many different families, most of which infect mammals. They may therefore constitute a major reservoir of viral diversity that should be analyzed carefully, to determine the role played by bats in the spread of zoonotic viral infections.
has issue date	2014-01-29(xsd:dateTime)
bibo:doi	10.1371/journal.pone.0087194
bibo:pmid	24489870
has license	cc-by
sha1sum (hex)	8ec3cfefcf560550c37dbc48107102bf2c893036
schema:url	https://doi.org/10.1371/journal.pone.0087194
resource representing a document's title	A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses
has PubMed Central identifier	PMC3906132
has PubMed identifier	24489870
schema:publication	PLoS One
resource representing a document's body	covid:8ec3cfefcf560550c37dbc48107102bf2c893036#body_text
is schema:about of	named entity 'MAMMALIAN' named entity 'prediction' named entity 'sequences' named entity 'public health' named entity 'Poxviridae' named entity 'PRELIMINARY STUDY' named entity 'BAT' named entity 'POXVIRIDAE' named entity 'STEP' named entity 'HUMAN DISEASES' named entity 'PLAYED' named entity 'BIOINFORMATICS ANALYSIS' named entity 'PREDICTION' named entity 'PICOBIRNAVIRIDAE' named entity 'FOUND' named entity 'ILLUMINA TECHNOLOGY' named entity 'READS' named entity 'BATS' named entity 'BACTERIA' named entity 'LITTLE' named entity 'BUNYAVIRUSES' named entity 'RESERVOIR' named entity 'KNOWN' named entity 'ANIMAL SPECIES' named entity 'HEALTH ISSUE' named entity 'THESE' named entity 'OBSERVATIONS' named entity 'SEQUENCES' named entity 'REOVIRIDAE' named entity 'DIVERSE' named entity 'PLANTS' named entity 'AMPLIFICATION' named entity 'DIFFERENT' named entity 'LUNGS' named entity 'A MAJOR' named entity 'GOAL' named entity 'BORNAVIRUSES' named entity 'USED' named entity 'SAMPLE' named entity 'RELEVANT' named entity 'VIRUS' named entity 'MAMMALIAN' named entity 'HIGH-THROUGHPUT SEQUENCING' named entity 'HARBOR' named entity 'CONTACT WITH' named entity 'FRENCH' named entity 'CONTIGS' named entity 'EPIDEMICS' named entity 'IMPORTANT' named entity 'PARTICULAR' named entity 'DETERMINED' named entity 'NEW' named entity 'VERTEBRATES' named entity 'HERPESVIRIDAE' named entity 'CAUSE' named entity 'FAMILIES' named entity 'POPULATION' named entity 'SPREAD' named entity 'PROFOUND' named entity 'DISTRIBUTION' named entity 'SEVERE' named entity 'ZOONOTIC' named entity 'INCLUDING' named entity 'SPECIES' named entity 'DEDICATED' named entity 'SEQUENCE' named entity 'BUNYAVIRIDAE' named entity 'IDENTIFICATION' named entity 'IDENTIFICATION' named entity 'SPECIES' named entity 'RESERVOIRS' named entity 'IN CONTACT WITH' named entity 'VIRUSES'

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