About: A novel low virulent respiratory infectious bronchitis virus originating from the recombination of QX, TW and 4/91 genotype strains in China

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About: A novel low virulent respiratory infectious bronchitis virus originating from the recombination of QX, TW and 4/91 genotype strains in China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	A novel low virulent respiratory infectious bronchitis virus originating from the recombination of QX, TW and 4/91 genotype strains in China
Creator	Cao, Yongchang Xue, Chunyi Liu, Yuan Han, Zhenling Huang, Mengjiao Zou, Chuangchao
Source	Elsevier; Medline; PMC
abstract	In China, variants of infectious bronchitis virus (IBV) evolve continually and diverse recombinant strains have been reported. Here, an IBV strain, designated as ck/CH/LJX/2017/07 (referred as JX17) was isolated from chicken vaccinated with H120 and 4/91 in Jiangxi, China, in 2017. Sequence analysis reveals of the S1 gene of JX17 the highest nucleotide identity of 98.15% with that of GI-7 genotype TW2575/98 strain. Furthermore, whole genome analysis among JX17 and other 18 IBV strains demonstrates that JX17 has the highest nucleotide identity of 95.94% with GI-19 genotype YX10 strain. Among all genes of JX17 except the S1 gene, the N gene and 3’ UTR have the highest identity to GI-13 genotype 4/91 strain and the rest genes are the most identical to GI-19 genotype YX10 strain. Analyzed by the RDP and SimPlot, the recombination of JX17 strain was shown to occur in regions which include 5’-terminal S1 gene (20,344 to 22,447 nt), most N gene and 3’ UTR (26,163 to 27,648 nt). The pathogenicity study shows that JX17 is a natural low virulent IBV variant which caused respiratory symptoms but no death. Taken together, these results indicate that IBV strains continue to evolve through genetic recombination and three prevalent genotypes in China including QX, TW and 4/91 have started to recombine.
has issue date	2020-01-11(xsd:dateTime)
bibo:doi	10.1016/j.vetmic.2020.108579
bibo:pmid	32122588
has license	no-cc
sha1sum (hex)	96473dd2c6f3374c32b63349a66b38a05788a1ac
schema:url	https://doi.org/10.1016/j.vetmic.2020.108579
resource representing a document's title	A novel low virulent respiratory infectious bronchitis virus originating from the recombination of QX, TW and 4/91 genotype strains in China
has PubMed Central identifier	PMC7111478
has PubMed identifier	32122588
schema:publication	Vet Microbiol
resource representing a document's body	covid:96473dd2c6f3374c32b63349a66b38a05788a1ac#body_text
is schema:about of	named entity 'VIRULENT' named entity 'strains' named entity 'nucleotide' named entity 'strain' named entity 'nucleotide' named entity 'recombination' named entity 'LOW' named entity 'DEATH' named entity 'S1 GENE' named entity 'THESE' named entity 'INCLUDING' named entity 'NATURAL' named entity 'RESULTS' named entity 'GENES' named entity 'EXCEPT' named entity 'PATHOGENICITY' named entity 'TAKEN' named entity 'CHICKEN' named entity 'EVOLVE' named entity 'REPORTED' covid:arg/96473dd2c6f3374c32b63349a66b38a05788a1ac named entity 'CAUSED' named entity 'CHINA' named entity 'GENOTYPES' named entity 'NUCLEOTIDE' named entity 'STRAINS' named entity 'N GENE' named entity 'HIGHEST' named entity 'CONTINUE' named entity 'REVEALS' named entity 'BUT' named entity 'UTR' named entity 'INCLUDE' named entity 'TERMINAL' named entity 'HERE' named entity 'LOW' named entity 'NOVEL' named entity 'CHINA' named entity 'RECOMBINATION' named entity 'GENOTYPE' named entity 'GENOME ANALYSIS' named entity 'ISOLATED' named entity 'RECOMBINATION' named entity 'OCCUR' named entity 'PREVALENT' named entity 'RESPIRATORY' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'STRAINS' named entity 'GENOTYPE' named entity 'RECOMBINANT' named entity 'REST' named entity 'IS A' named entity 'GENETIC RECOMBINATION' named entity 'REGIONS' named entity 'VARIANT' named entity 'HAVE' named entity 'VIRULENT' named entity 'INFECTIOUS BRONCHITIS VIRUS' named entity 'IDENTICAL' named entity 'RDP' named entity 'STARTED' named entity 'IDENTITY' named entity 'ANALYZED' named entity 'RESPIRATORY SYMPTOMS' named entity 'VARIANTS' named entity 'STRAIN' named entity 'WHOLE GENOME' named entity 'DESIGNATED' named entity 'STUDY' named entity 'SEQUENCE ANALYSIS' named entity 'VACCINATED' named entity 'DIVERSE' named entity 'recombinant' named entity 'strain' named entity '3' UTR' named entity 'prevalent'

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