About: SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
Creator	Kandeil, Ahmed Kuroda, Makoto Sekizuka, Tsuyoshi Suzuki, Motoi Itokawa, Kentaro Kamiya, Hajime Kobayashi, Yusuke Shioda, Tatsuo Kadokura, Keisuke Matsui, Tamano Taira, Masakatsu Hachisu, Yushi Kishimoto, Tsuyoshi Kuramoto, Sanae Nariai, Eri Shinohara, Michiyo Tokaji, Akihiko
Source	Medline; PMC; WHO
abstract	Japan has reported 26 cases of coronavirus disease 2019 (COVID-19) linked to cruise tours on the River Nile in Egypt between March 5 and 15, 2020. Here, we characterized the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome of isolates from 10 travelers who returned from Egypt and from patients possibly associated with these travelers. We performed haplotype network analysis of SARS-CoV-2 isolates using genome-wide single-nucleotide variations. Our analysis identified two potential Egypt-related clusters from these imported cases, and these clusters were related to globally detected viruses in different countries.
has issue date	2020-06-05(xsd:dateTime)
bibo:doi	10.3389/fmicb.2020.01316
bibo:pmid	32582136
has license	cc-by
sha1sum (hex)	967472ec37ca3860ccf8c937b4817a52b6cb7eb1
schema:url	https://doi.org/10.3389/fmicb.2020.01316
resource representing a document's title	SARS-CoV-2 Genome Analysis of Japanese Travelers in Nile River Cruise
has PubMed Central identifier	PMC7291780
has PubMed identifier	32582136
schema:publication	Front Microbiol
resource representing a document's body	covid:967472ec37ca3860ccf8c937b4817a52b6cb7eb1#body_text
is schema:about of	named entity 'Nile' named entity 'Cruise' named entity 'Genome Analysis' named entity 'multiplex PCR' named entity 'dimerization' named entity 'genome sequence' named entity 'haplotype' named entity 'genome sequences' named entity 'COVID-19 outbreak' named entity 'Wuhan' named entity 'Japan' named entity 'NGS' named entity 'Japan Agency for Medical Research and Development' named entity 'haplotype' named entity 'amplicons' named entity 'genome sequence' named entity 'SARS-CoV-2' named entity 'sore throat' named entity 'PCR' named entity 'Luxor' named entity 'haplotype' named entity 'tested positive' named entity 'haplotype' named entity 'virus' named entity 'haplotypes' named entity 'SNVs' named entity 'COVID' named entity 'Cairo' named entity 'Egypt' named entity 'genome sequence' named entity 'Infections' named entity 'genome sequence' named entity 'single-nucleotide' named entity 'SARS-CoV-2' named entity 'Egypt' named entity 'Nile River' named entity 'COVID-19' named entity 'Wuhan City' named entity 'March 9' named entity 'cruise ship' named entity 'epidemiological study' named entity 'SNV' named entity 'GISAID' named entity 'SARS-CoV' named entity 'March 20' named entity 'Nile River' named entity 'Japan' named entity 'MAFFT' named entity 'quarantine' named entity 'genome sequence' named entity 'clade' named entity 'SARS-CoV-2' named entity 'infection' named entity 'multiplexed' named entity 'Egypt' named entity 'public health' named entity 'GISAID' named entity 'SARS-CoV-2' named entity 'genome sequences' named entity '6 March' named entity 'Japan' named entity 'written consent' named entity 'Egypt' named entity 'Coronaviridae' named entity 'flu-like symptoms'

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