About: Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community

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About: Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community
Creator	Zhang, Yun Kumar, Sanjeev Gu, Zhiping Zaremba, Sam Zhou, Liwei Greer, Douglas Jen, Wei Klem, Edward Larsen, Christopher Pickett, Brett Scheuermann, Richard Stewart, Lucy Sun, Guangyu
Source	Medline; PMC
abstract	Several viruses within the Coronaviridae family have been categorized as either emerging or re-emerging human pathogens, with Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) being the most well known. The NIAID-sponsored Virus Pathogen Database and Analysis Resource (ViPR, www.viprbrc.org) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses, including the entire Coronaviridae family. ViPR provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, host factor data, and other data types through an intuitive web-based search interface. Records returned from these queries can then be subjected to web-based analyses including: multiple sequence alignment, phylogenetic inference, sequence variation determination, BLAST comparison, and metadata-driven comparative genomics statistical analysis. Additional tools exist to display multiple sequence alignments, view phylogenetic trees, visualize 3D protein structures, transfer existing reference genome annotations to new genomes, and store or share results from any search or analysis within personal private ‘Workbench’ spaces for future access. All of the data and integrated analysis and visualization tools in ViPR are made available without charge as a service to the Coronaviridae research community to facilitate the research and development of diagnostics, prophylactics, vaccines and therapeutics against these human pathogens.
has issue date	2012-11-19(xsd:dateTime)
bibo:doi	10.3390/v4113209
bibo:pmid	23202522
has license	cc-by
sha1sum (hex)	9680a6922144725138edc920dbf6c3dc48e822b6
schema:url	https://doi.org/10.3390/v4113209
resource representing a document's title	Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community
has PubMed Central identifier	PMC3509690
has PubMed identifier	23202522
schema:publication	Viruses
resource representing a document's body	covid:9680a6922144725138edc920dbf6c3dc48e822b6#body_text
is schema:about of	named entity 'COMPREHENSIVE' named entity 'determination' named entity 'family' named entity 'workflows' named entity 'sequence' named entity 'Bioinformatics' named entity 'Database' named entity 'ANALYSIS' named entity 'KNOWN' named entity 'MULTIPLE SEQUENCE ALIGNMENT' named entity 'COMPARATIVE GENOMICS' named entity 'SEARCH' named entity 'EPITOPES' named entity 'HUMAN VIRUS' named entity 'COMPARISON' named entity 'DATA' named entity 'SEQUENCE VARIATION' named entity 'RESOURCE' named entity 'ANNOTATIONS' named entity 'STATISTICAL ANALYSIS' named entity 'WORKFLOWS' named entity 'RELATED' named entity 'VIPR' named entity 'ACCESS' named entity 'PROVIDES' named entity 'BASED' named entity 'ORG' named entity 'VIRUS' named entity 'METADATA' named entity 'CORONAVIRIDAE' named entity 'RESEARCH COMMUNITY' named entity 'PATHOGEN' named entity 'RETURNED' named entity 'GENE' named entity 'EMERGING OR RE-EMERGING' named entity 'INCLUDING' named entity 'CORONAVIRUS' named entity 'PROTEIN ' named entity 'SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS' named entity 'SEQUENCE' named entity 'RANGE' named entity 'PATHOGEN' named entity 'CATEGORIZED' named entity 'RESOURCE' named entity 'VIRUS' named entity 'HUMAN' named entity 'HAVE' named entity 'BIOINFORMATICS' named entity 'ENTIRE' named entity 'BEING' named entity 'ADDITIONAL' named entity 'BIOINFORMATICS' named entity 'ANALYSIS' named entity 'WWW' named entity 'THESE' named entity 'INTERFACE' named entity 'EITHER' named entity 'WEB' named entity 'IMMUNE' named entity 'DRIVEN' named entity 'BROAD' named entity 'NIAID' named entity 'STRUCTURES' named entity 'BLAST' named entity 'DATABASE' named entity 'DATABASE' named entity 'RECORDS' named entity 'DETERMINATION' named entity 'DATA TYPES'

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