About: Detection and characterisation of canine astrovirus, canine parvovirus and canine papillomavirus in puppies using next generation sequencing

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About: Detection and characterisation of canine astrovirus, canine parvovirus and canine papillomavirus in puppies using next generation sequencing Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Detection and characterisation of canine astrovirus, canine parvovirus and canine papillomavirus in puppies using next generation sequencing
Creator	Chamings, Anthony Vibin, Jessy Bhatta, Raj Soren Alexandersen, &
Source	Medline; PMC
abstract	Gastroenteritis in young animals is a clinical presentation with many infectious and non- infectious aetiologies. We used next generation sequencing (NGS) to investigate the possible infectious causes of gastroenteritis in puppies from a dog kennel in Victoria, Australia. The near complete genome of a canine astrovirus was obtained from pooled faecal samples, and was found to be 94.7% identical with a canine astrovirus detected in the United Kingdom in 2012. The phylogenetic analysis of the capsid gene found similarities to those of canine astroviruses identified in Italy in 2005 and in UK and Hungary in 2012, but distant from that of a canine astrovirus previously identified in Australia in 2012. Thus, different serotypes of canine astrovirus are likely circulating in Australia. The close relationship to European astroviruses also suggested that there had been recent movements of ancestor canine astroviruses between Australia and Europe. NGS also detected other infections in the puppies including several canine papillomaviruses and a canine parvovirus (vaccine strain) as well as a very low level of campylobacter. Canine astrovirus was the probable cause of diarrhoea in these puppies, with the possible involvement of campylobacter bacteria. NGS was effective as a non-targeted method to determine the likely infectious cause of gastroenteritis.
has issue date	2019-03-14(xsd:dateTime)
bibo:doi	10.1038/s41598-019-41045-z
bibo:pmid	30872719
has license	cc-by
sha1sum (hex)	999baa06c2bdc67ba7e4707ddcf5b3b296f85985
schema:url	https://doi.org/10.1038/s41598-019-41045-z
resource representing a document's title	Detection and characterisation of canine astrovirus, canine parvovirus and canine papillomavirus in puppies using next generation sequencing
has PubMed Central identifier	PMC6418273
has PubMed identifier	30872719
schema:publication	Sci Rep
resource representing a document's body	covid:999baa06c2bdc67ba7e4707ddcf5b3b296f85985#body_text
is schema:about of	named entity 'CANINE PARVOVIRUS' named entity 'PUPPIES' named entity 'CANINE PAPILLOMAVIRUS' named entity 'NGs' named entity 'campylobacter' named entity 'CANINE ASTROVIRUS' named entity 'DETECTION' named entity 'USING' named entity 'BUT' named entity 'SAMPLES' named entity 'VICTORIA' named entity 'DOG' named entity 'MOVEMENTS' named entity 'USED' named entity 'THESE' named entity 'FOUND' named entity 'GENE' named entity 'DIARRHOEA' named entity 'METHOD' named entity 'AUSTRALIA' named entity 'EUROPEAN' named entity 'CIRCULATING' named entity 'CANINE ASTROVIRUS' named entity 'PHYLOGENETIC ANALYSIS' named entity 'ANCESTOR' named entity 'DIFFERENT' named entity 'IDENTICAL' named entity 'CANINE PARVOVIRUS' named entity 'INFECTIOUS' named entity 'HUNGARY' named entity 'FAECAL' named entity 'NEXT GENERATION SEQUENCING' named entity 'NGS' named entity 'INVOLVEMENT' named entity 'BACTERIA.' named entity 'CAPSID' named entity 'SEROTYPES' named entity 'ITALY' named entity 'PAPILLOMAVIRUSES' named entity 'UNITED KINGDOM' named entity 'LIKELY' named entity 'CANINE' named entity 'DISTANT FROM' named entity 'EUROPE' named entity 'IDENTIFIED' named entity 'VERY LOW LEVEL' named entity 'CLOSE RELATIONSHIP' named entity 'INFECTIOUS CAUSE' named entity 'GASTROENTERITIS' named entity 'PUPPIES' named entity 'GENOME' named entity 'TO INVESTIGATE' named entity 'EFFECTIVE' named entity 'CAUSE' named entity 'DETERMINE' named entity 'NEXT GENERATION SEQUENCING' named entity 'CAUSES' named entity 'POOLED' named entity 'NON-' named entity 'PROBABLE' named entity 'TARGETED' named entity 'STRAIN' named entity 'INFECTIONS' named entity 'POSSIBLE' named entity 'RECENT' named entity 'NEAR COMPLETE' named entity 'OBTAINED' named entity 'ASTROVIRUSES' named entity 'PREVIOUSLY' named entity 'CAMPYLOBACTER' named entity 'DETECTED' named entity 'INCLUDING' covid:arg/999baa06c2bdc67ba7e4707ddcf5b3b296f85985 named entity 'european' named entity 'europe' named entity 'probable' named entity 'serotypes' named entity 'complete'

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