About: Prevalence and phylogenetic analysis of canine kobuviruses in diarrhoetic dogs in northeast China

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About: Prevalence and phylogenetic analysis of canine kobuviruses in diarrhoetic dogs in northeast China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Prevalence and phylogenetic analysis of canine kobuviruses in diarrhoetic dogs in northeast China
Creator	Geng, Yufei Guo, Donghua Li, Chunqiu Su, Mingjun Sun, Dongbo Wang, Enyu Wang, Xinyu Wang, Zhihui Wei, Shan Zhao, Xiwen
Source	Medline; PMC
abstract	Canine kobuviruses (CaKVs) are newly recognized picornaviruses that have been recently detected in dogs in the U.S.A., Italy, U.K., the Republic of Korea and Tanzania. To trace the evolution of CaKV strains, a total of 201 fecal samples from rectal swabs of diarrheic dogs, which were obtained from May 2014 to April 2015 in northeast China, were detected by reverse transcription-PCR targeting a partial (504 bp) fragment of the 3D gene. Furthermore, a phylogenetic analysis of the CaKV strains identified in northeast China was conducted based on the partial 3D gene sequence. The results indicated that 36 fecal samples (17.91%, 36/201) were positive for CaKV, in which the co-infection rates of canine coronavirus, canine parvovirus-2 and canine bocavirus were 58.33%, 41.67%, and 11.11%, respectively. Sequence comparison of the partial 3D gene revealed nucleotide homologies of 94.4–100%, 95.6–98.6%, 94.3–97.6%, 94.4–96.3% and 93.3–95.1% within the 36 Chinese CaKV strains, and between the 36 Chinese CaKV strains and four CaKV reference strains from South Korea, Italy, U.S.A. and Tanzania, respectively. A phylogenetic tree revealed that the 36 Chinese CaKV strains formed one specific CaKV lineage with CaKVs that have recently been identified in other countries. The 36 Chinese CaKV strains were closely related to CaKV reference strains from Asia and Europe, but differed genetically from CaKV reference strains from North America and Africa. This study provides evidence that CaKVs circulate in diarrhoetic dogs in China and that they exhibit substantial genetic diversity and high co-infection rates with other enteric viruses.
has issue date	2015-08-07(xsd:dateTime)
bibo:doi	10.1292/jvms.15-0414
bibo:pmid	26256044
has license	cc-by-nc-nd
sha1sum (hex)	9c6e96b1ba2b2e3a95621656bbf142cc11eb955a
schema:url	https://doi.org/10.1292/jvms.15-0414
resource representing a document's title	Prevalence and phylogenetic analysis of canine kobuviruses in diarrhoetic dogs in northeast China
has PubMed Central identifier	PMC4751110
has PubMed identifier	26256044
schema:publication	J Vet Med Sci
resource representing a document's body	covid:9c6e96b1ba2b2e3a95621656bbf142cc11eb955a#body_text
is schema:about of	named entity 'TANZANIA' named entity 'PARTIAL' named entity 'EVOLUTION' named entity 'AFRICA' named entity 'RECENTLY' named entity 'CANINE BOCAVIRUS' named entity 'REVEALED' named entity 'REVERSE TRANSCRIPTION' named entity 'HAVE' named entity 'COUNTRIES' named entity 'BUT' named entity 'EVIDENCE' named entity 'TOTAL' named entity 'DETECTED' named entity 'PROVIDES' named entity 'POSITIVE FOR' named entity 'ITALY' named entity 'SOUTH KOREA' named entity 'NEWLY' named entity 'RECTAL' named entity 'CANINE CORONAVIRUS' named entity 'U.K.' named entity 'SAMPLES' named entity 'CHINESE' named entity 'South Korea' named entity 'canine' named entity 'northeast China' named entity 'PHYLOGENETIC ANALYSIS' named entity 'SPECIFIC' named entity 'CHINA' covid:arg/9c6e96b1ba2b2e3a95621656bbf142cc11eb955a named entity 'RESULTS' named entity 'FECAL' named entity 'STUDY' named entity 'GENE' named entity 'EUROPE' named entity 'CHINA' named entity 'PREVALENCE' named entity 'NORTHEAST' named entity 'PHYLOGENETIC ANALYSIS' named entity '2015' named entity 'NORTHEAST' named entity 'VIRUSES' named entity 'LINEAGE' named entity 'FRAGMENT OF' named entity 'CO-INFECTION' named entity 'NORTH AMERICA' named entity 'RATES' named entity 'OBTAINED' named entity 'CANINE PARVOVIRUS' named entity 'ASIA' named entity 'CANINE' named entity 'EXHIBIT' named entity 'TRACE' named entity 'CIRCULATE' named entity '100%' named entity 'NUCLEOTIDE' named entity 'DOGS' named entity 'ENTERIC' named entity 'TARGETING' named entity 'PICORNAVIRUSES' named entity 'U.S.A.' named entity 'APRIL' named entity 'CANINE' named entity 'REFERENCE' named entity 'SWABS' named entity 'PHYLOGENETIC TREE' named entity 'REPUBLIC OF KOREA' named entity 'RELATED' named entity 'PCR' named entity 'DOGS' named entity 'SEQUENCE COMPARISON'

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