About: OutbreakTools: A new platform for disease outbreak analysis using the R software

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	OutbreakTools: A new platform for disease outbreak analysis using the R software
Creator	Jombart, Thibaut Rambaut, Andrew Camacho, Anton Ratmann, Oliver Cori, Anne Fraser, Christophe Didelot, Xavier Ferguson, Neil Cauchemez, Simon Frost, Simon Soubeyrand, Samuel Baguelin, Marc Birrell, Paul Hens, Niel Colijn, Caroline Collins, Caitlin Hugues, Joseph Höhle, Michael Opatowski, Lulla Wallinga, Jacco Ypma, Rolf Suchard, Marc Aanensen, David
source	PMC
abstract	The investigation of infectious disease outbreaks relies on the analysis of increasingly complex and diverse data, which offer new prospects for gaining insights into disease transmission processes and informing public health policies. However, the potential of such data can only be harnessed using a number of different, complementary approaches and tools, and a unified platform for the analysis of disease outbreaks is still lacking. In this paper, we present the new R package OutbreakTools, which aims to provide a basis for outbreak data management and analysis in R. OutbreakTools is developed by a community of epidemiologists, statisticians, modellers and bioinformaticians, and implements classes and methods for storing, handling and visualizing outbreak data. It includes real and simulated outbreak datasets. Together with a number of tools for infectious disease epidemiology recently made available in R, OutbreakTools contributes to the emergence of a new, free and open-source platform for the analysis of disease outbreaks.
has issue date	2014-06-01(xsd:dateTime)
bibo:doi	10.1016/j.epidem.2014.04.003
bibo:pmid	24928667
has license	cc-by
schema:url	https://doi.org/10.1016/j.epidem.2014.04.003
resource representing a document's title	OutbreakTools: A new platform for disease outbreak analysis using the R software
has PubMed Central identifier	PMC4058532
has PubMed identifier	24928667
schema:publication	Epidemics
resource representing a document's body	covid:PMC4058532#body_text
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