About: Epidemiological and phylogenetic analysis of canine kobuviruses in Tangshan, China

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About: Epidemiological and phylogenetic analysis of canine kobuviruses in Tangshan, China Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Epidemiological and phylogenetic analysis of canine kobuviruses in Tangshan, China
Creator	Hou, Shaohua Jia, Hong Guo, · Liu, Xueting Feng, Qianqian Jiang, Yajun Lin, Weidong Ting Xin, · Wang, Zhaoyang Zhu, Hongfei
source	Medline; PMC
abstract	Canine kobuviruses (CaKoV) have been found in healthy and diarrheic dogs as well as asymptomatic wild carnivores in various countries. In order to investigate the prevalence and evolution of CaKoV in Tangshan, China, 82 dog fecal samples from pet hospitals in Tangshan were subjected to RT-PCR targeting a segment of the 3D gene of CaKoV. Using this method, we identified CaKoV in 14 samples (17.07%, 14/82). Of the CaKoV-positive samples, 78.57% (11/14) and 50% (7/14) were positive for canine parvovirus and canine coronavirus, respectively. The nucleotide sequences of the 14 strains 96.6%–100% identical to each other and 77.6%–99.2% identical to representative sequences from the NCBI GenBank database. We also amplified the 14 VP1 gene sequences and found that they were 93.3%–99.6% identical to each other and 73.3%–97.8% identical to representative sequences from the NCBI GenBank database. Phylogenetic analysis revealed that the 14 CaKoV strains from Tangshan are closely related to those identified in China and Thailand and display less similarity to those found in Africa, the United States, and Europe. Our data suggest that CaKoV circulated in young pet dogs in Tangshan and displays a high co-infection rate with CCoV and CPV. However, the relationship between the three viruses and their roles in the host requires further investigation.
has issue date	2020-07-08(xsd:dateTime)
bibo:doi	10.1007/s00705-020-04727-y
bibo:pmid	32643035
has license	no-cc
sha1sum (hex)	a6af99a1338b7d71c91af00a6256dd955790a104
schema:url	https://doi.org/10.1007/s00705-020-04727-y
resource representing a document's title	Epidemiological and phylogenetic analysis of canine kobuviruses in Tangshan, China
has PubMed Central identifier	PMC7341465
has PubMed identifier	32643035
schema:publication	Arch Virol
resource representing a document's body	covid:a6af99a1338b7d71c91af00a6256dd955790a104#body_text
is schema:about of	named entity 'Canine' named entity 'sequences' named entity 'dogs' named entity 'Our' named entity 'Tangshan' named entity 'canine coronavirus' named entity 'Tangshan' named entity 'CO-INFECTION' named entity 'CIRCULATED' named entity 'Tangshan' named entity 'strains' named entity 'United States' named entity 'samples' named entity 'pet' named entity 'segment' named entity 'pet' named entity 'database' named entity 'sequences' named entity 'evolution' named entity 'wild carnivores' named entity 'similarity' named entity 'Epidemiological' named entity 'Tangshan' named entity 'Thailand' named entity 'Phylogenetic analysis' named entity 'CaKoV' named entity '11/14' named entity 'canine parvovirus' named entity 'China' named entity 'phylogenetic analysis' named entity 'Tangshan' named entity 'CaKoV' named entity 'sequence identity' named entity 'CaKoV' named entity 'VP1' named entity '4/20' named entity 'CaKoV' named entity 'Thailand' named entity 'infection' named entity 'CaKoV' named entity 'ORF' named entity 'VP1' named entity 'parasites' named entity 'CaKoV' named entity 'gene sequences' named entity 'sequence identity' named entity 'gene sequences' named entity 'viruses' named entity 'neighbor-joining' named entity 'enteroviruses' named entity 'sequence identity' named entity 'coinfections' named entity 'supernatant' named entity 'gastroenteritis' named entity 'South Korea' named entity 'virus' named entity 'sequence identity' named entity 'Japan' named entity 'northeast China' named entity 'competent cells' named entity 'sequence identity' named entity 'CaKoV' named entity 'reverse transcribed' named entity 'kobuvirus' named entity 'co-infected' named entity 'kobuvirus' named entity 'bacteria' named entity 'open reading frame' named entity 'CaKoV' named entity 'Thailand' named entity 'gene sequences' named entity 'diarrhea'

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