About: Molecular detection and characterization of unclassified bovine enteric caliciviruses in South Korea

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About: Molecular detection and characterization of unclassified bovine enteric caliciviruses in South Korea Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Molecular detection and characterization of unclassified bovine enteric caliciviruses in South Korea
Creator	Cho, Kyoung-Oh Hyun, Bang-Hun Jeong, Cheol Kang, Mun-Il Kim, Ha-Hyun Park, Sang-Ik Park, Su-Jin Jeong, Young-Ju Chun, Young-Hyun
Source	Elsevier; Medline; PMC
abstract	Abstract The unclassified bovine enteric calicivirus (BEC) is a new bovine enteric calicivirus that is different from bovine norovirus, and causes diarrhea and pathologies in the small intestine of calves. This virus includes Nebraska (NB)- and Newbury agent 1 (NA1)-like strains. The prevalence of this BEC and its genetic characterization has only been reported in the UK and the USA. This study examined the prevalence and genetic diversity of these BECs in diarrheic calves in South Korea. Among a total of 645 diarrheic fecal specimens obtained from 629 cattle herds, these unclassified BECs were detected in 59 (9.1%) diarrheic fecal samples from 57 herds (9.3%) by either RT-PCR or nested PCR. Sequence and phylogenetic analyses of the partial RdRp gene showed that all the Korean BECs clustered together and were closely related to the NB-like viruses (80.9–88.1% nucleotide and 84.5–98.4% amino acid) but not to the NA1-like viruses (75.8–78.4% nucleotide and 79.7–82.8% amino acid). Although these viruses could not be classified into NA1- and NB-like viruses from the sequence and phylogenetic data of the entire capsid gene, all the Korean BECs clustered together on a branch separate from the other known BECs. These results show that these BEC infections are endemic in diarrheic calves in South Korea. The infecting strains are genetically closer to the NB-like viruses but have a distinct evolutionary pathway.
has issue date	2008-08-25(xsd:dateTime)
bibo:doi	10.1016/j.vetmic.2008.01.017
bibo:pmid	18387758
has license	els-covid
sha1sum (hex)	a939fb86b3a86a42e48535e0e0dfa6ec6a0fbe7c
schema:url	https://doi.org/10.1016/j.vetmic.2008.01.017
resource representing a document's title	Molecular detection and characterization of unclassified bovine enteric caliciviruses in South Korea
has PubMed Central identifier	PMC7126893
has PubMed identifier	18387758
schema:publication	Veterinary Microbiology
resource representing a document's body	covid:a939fb86b3a86a42e48535e0e0dfa6ec6a0fbe7c#body_text
is schema:about of	named entity 'BECs' named entity 'acid' named entity 'infecting' named entity 'Newbury' named entity 'viruses' covid:arg/a939fb86b3a86a42e48535e0e0dfa6ec6a0fbe7c named entity 'gene' named entity 'gene' named entity 'viruses' named entity 'RT-PCR' named entity 'gastroenteritis' named entity 'nested PCR' named entity 'Campylobacter' named entity 'nested PCR' named entity 'endemic' named entity 'capsid' named entity 'similar manner' named entity 'phylogenetic analysis' named entity 'bovine' named entity 'P1B' named entity 'RT-PCR' named entity 'genetic' named entity 'These' named entity 'closer' named entity 'infection status' named entity 'gene' named entity 'nucleotide' named entity 'E. coli' named entity 'capsid' named entity 'RdRp' named entity 'viruses' named entity 'feces' named entity 'single-stranded' named entity 'RdRp' named entity 'viruses' named entity 'calicivirus' named entity 'viruses' named entity 'BCoV' named entity 'RNA genome' named entity 'centrifuged' named entity 'genus' named entity 'receptor binding' named entity 'gene' named entity 'Vesivirus' named entity 'genetic divergence' named entity 'caliciviruses' named entity 'RT-PCR' named entity 'herds' named entity 'endemic' named entity '629' named entity 'bovine' named entity 'nested PCR' named entity 'viruses' named entity 'South Korea' named entity 'small intestine' named entity 'capsid' named entity 'endemic' named entity 'viruses' named entity 'cattle' named entity 'virus' named entity 'South Korea' named entity 'vesicular' named entity 'Nebraska' named entity 'genus' named entity 'agarose gel electrophoresis' named entity 'RT-PCR' named entity 'viruses' named entity 'nucleotide' named entity 'calicivirus' named entity 'Caliciviridae' named entity 'gene' named entity 'ORF1' named entity 'noroviruses'

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