About: Detection and genotyping of Korean porcine rotaviruses

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About: Detection and genotyping of Korean porcine rotaviruses Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

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type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	Detection and genotyping of Korean porcine rotaviruses
Creator	Cho, Kyoung-Oh Kang, Mun-Il Kim, Ha-Hyun Park, Sang-Ik Park, Su-Jin Jeong, Young-Ju Kim, Hyun-Jeong Kwon, Hyoung-Jun Phuong, Thi Ha, Mai
source	Elsevier; Medline; PMC
abstract	Porcine group A rotavirus (GARV) is considered to be an important animal pathogen due to their economic impact in the swine industry and its potential to cause heterologous infections in humans. This study examined 475 fecal samples from 143 farms located in 6 provinces across South Korea. RT-PCR and nested PCR utilizing primer pairs specific for the GARV VP6 gene detected GARV-positive reactions in 182 (38.3%) diarrheic fecal samples. A total of 98 porcine GARV strains isolated from the GARV-positive feces were analyzed for G and P genotyping. Based on the sequence and phylogenetic analyses, the most predominant combination of G and P genotypes was G5P[7], found in 63 GARV strains (64.3%). The other combinations of G and P genotypes were G8P[7] (16 strains [16.3%]), G9P[7] (7 strains [7.1%]), G9P[23] (2 strains [2.0%]), and G8P[1] (1 strain [1.0%]). The counterparts of G or P genotypes were not determined in three G5, five P[7], and one P[1] strains. Interestingly, phylogenetic analysis indicated that all Korean G9 strains were more closely related to lineage VI porcine and human viruses than to other lineages (I–V) of GARVs and to Korean human G9 strains (lineage III). These results show that porcine GARV infections are common in diarrheic piglets in South Korea. The infecting strains are genetically diverse, and include homologous (G5P[7]), heterologous (G8P[1]), and reassortant (G8P[7]), as well as emerging G9 GARV strains.
has issue date	2010-08-26(xsd:dateTime)
bibo:doi	10.1016/j.vetmic.2010.01.019
bibo:pmid	20359834
has license	no-cc
sha1sum (hex)	b3487c94e4f80b43ee541b21249b1885a20f34ce
schema:url	https://doi.org/10.1016/j.vetmic.2010.01.019
resource representing a document's title	Detection and genotyping of Korean porcine rotaviruses
has PubMed Central identifier	PMC7117351
has PubMed identifier	20359834
schema:publication	Vet Microbiol
resource representing a document's body	covid:b3487c94e4f80b43ee541b21249b1885a20f34ce#body_text
is schema:about of	named entity 'ROTAVIRUSES' named entity 'PATHOGEN' named entity 'KOREAN' named entity 'PORCINE' named entity 'LINEAGE' named entity 'RESULTS' named entity 'PAIRS' named entity 'RELATED' named entity 'THEIR' named entity 'NOT DETERMINED' named entity 'INDUSTRY' named entity 'ACROSS' named entity 'STRAIN' named entity 'VP6' named entity 'PHYLOGENETIC ANALYSIS' named entity 'FARMS' named entity '475' named entity 'FECAL' named entity 'STUDY' named entity 'TOTAL' named entity 'REACTIONS' named entity 'COMMON' named entity 'NESTED PCR ' named entity 'DETECTED' named entity '5B1' named entity 'ANIMAL' named entity 'PRIMER' named entity 'FOUND' named entity '282' named entity 'ISOLATED' named entity 'HUMANS' named entity 'GENOTYPES' named entity 'COMBINATION' named entity 'POTENTIAL' named entity 'STRAINS' named entity 'INFECTIONS' named entity 'GENE' named entity '143' named entity 'PREDOMINANT' named entity 'SOUTH KOREA' named entity 'INCLUDE' named entity 'ANALYZED' named entity 'GROUP A ROTAVIRUS' named entity 'GENOTYPING' named entity 'THESE' named entity 'RT-PCR' named entity 'HUMAN' named entity 'SPECIFIC' covid:arg/b3487c94e4f80b43ee541b21249b1885a20f34ce named entity 'POSITIVE' named entity 'INFECTING' named entity '28I' named entity 'DUE TO' named entity 'FECES' named entity 'HOMOLOGOUS' named entity 'ITS' named entity '287' named entity 'PORCINE' named entity 'ECONOMIC IMPACT' named entity 'SWINE' named entity 'SEQUENCE' named entity 'VIRUSES' named entity 'III' named entity 'LOCATED IN' named entity 'CAUSE' named entity 'INDICATED' named entity 'HETEROLOGOUS' named entity 'CONSIDERED' named entity 'DIVERSE' named entity 'BASED' named entity 'SAMPLES' named entity 'IMPORTANT'

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