About: Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs
Creator	Wille, Michelle Hayer, Juliette Larsson, Simon Malmberg, Maja Theelke, Anna-Karin Van Damme, Renaud Wensman, Jonas
Source	Elsevier; Medline; PMC
abstract	Canine respiratory coronavirus (CRCoV) has been identified as a causative agent of canine infectious respiratory disease, an upper respiratory infection affecting dogs. The epidemiology is currently opaque, with an unclear understanding of global prevalence, pathology, and genetic characteristics. In this study, Swedish privately-owned dogs with characteristic signs of canine infectious respiratory disease (n = 88) were screened for CRCoV and 13 positive samples (14.7%, 8.4–23.7% [95% confidence interval (CI)]) were further sequenced. Sequenced Swedish CRCoV isolates were highly similar despite being isolated from dogs living in geographically distant locations and sampled across 3 years (2013–2015). This is due to a single introduction into Swedish dogs in approximately 2010, as inferred by time structured phylogeny. Unlike other CRCoVs, there was no evidence of recombination in Swedish CRCoV isolates, further supporting a single introduction. Finally, there were low levels of polymorphisms, in the spike genes. Overall, we demonstrate that there is little diversity of CRCoV which is endemic in Swedish dogs.
has issue date	2020-03-20(xsd:dateTime)
bibo:doi	10.1016/j.meegid.2020.104290
bibo:pmid	32205264
has license	no-cc
sha1sum (hex)	b3d4e08fe0e3222948b604f2e367a98c2f37f26a
schema:url	https://doi.org/10.1016/j.meegid.2020.104290
resource representing a document's title	Evolutionary genetics of canine respiratory coronavirus and recent introduction into Swedish dogs
has PubMed Central identifier	PMC7102562
has PubMed identifier	32205264
schema:publication	Infect Genet Evol
resource representing a document's body	covid:b3d4e08fe0e3222948b604f2e367a98c2f37f26a#body_text
is schema:about of	named entity 'CANINE RESPIRATORY CORONAVIRUS' named entity 'RECENT' named entity 'SWEDISH' named entity 'INTRODUCTION' named entity 'DOGS' named entity 'EVOLUTIONARY GENETICS' named entity 'dogs' named entity 'Evolutionary genetics' named entity 'cough' named entity 'virus' named entity 'phylogenetic analysis' named entity 'pathogens' named entity 'Italy' named entity 'CRCoV' named entity 'gene' named entity 'Europe' named entity 'Swedish' named entity '50 million' named entity 'BCoV' named entity 'CRCoV' named entity 'coding regions' named entity 'Sweden' named entity 'gene' named entity '4 nM' named entity 'CRCoV' named entity 'CRCoV' named entity 'Carlsbad, CA' named entity 'viruses' named entity 'Coronaviruses' named entity 'Sweden' named entity 'Italy' named entity 'fastp' named entity 'Richmond, CA' named entity 'canine' named entity 'Swedish' named entity 'bronchopneumonia' named entity 'Agilent Technologies' named entity 'Palo Alto' named entity 'canine' named entity 'viruses' named entity 'rubulavirus' named entity 'recombination' named entity 'recombination' named entity 'Swedish Board of Agriculture' named entity 'viral genomes' named entity 'double-stranded' named entity 'Viral metagenomics' named entity 'cynos' named entity 'Streptavidin' named entity 'substitution model' named entity 'virus' named entity 'Middle East Respiratory Syndrome' named entity 'viruses' named entity 'metagenomics' named entity 'antibiotics' named entity 'Uppsala' named entity 'PCR' named entity 'Epidemiology' named entity 'Sambar deer' named entity 'sialic acids' named entity 'viruses' named entity 'Oslo' named entity 'BCoV' named entity 'pathogens' named entity 'Korea' named entity 'CRCoV' named entity 'Thermo Fisher Scientific' named entity 'Infection' named entity 'codon' named entity 'kDa' named entity 'upper respiratory' named entity 'vaccines' named entity 'gene' named entity 'Illumina' named entity 'Ireland'

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