About: Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil

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About: Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil
Creator	Modha, Sejal Ometto, Tatiana Durigon, Edison Figueiredo, Moraes Marciel De Souza, William Tadeu, Luiz De Araujo, Jansen Fumagalli, Marcílio Jorge, Marcílio Matsumiya Thomazelli, Luciano Murcia, Ramiro
Source	Medline; PMC
abstract	Birds are the natural reservoir of viruses with zoonotic potential, as well as contributing to the evolution, emergence, and dissemination of novel viruses. In this study, we applied a high-throughput screening approach to identify the diversity of viruses in 118 samples of birds captured between October 2006 to October 2010 in the North and Northeast regions of Brazil. We found nearly complete genomes of novel species of astrovirus and calicivirus in cloacal swabs of ruddy turnstones (Arenaria interpres) collected in Coroa do Avião islet, Pernambuco State. These viruses are positive-sense single-stranded RNA with a genome of ~7 to 8 kb, and were designated as Ruddy turnstone astrovirus (RtAstV) and Ruddy turnstone calicivirus (RTCV), respectively. Phylogenetic analysis showed that RtAstV and RTCV grouped in a monophyletic clade with viruses identified from poultry samples (i.e., chicken, goose, and turkey), including viruses associated with acute nephritis in chickens. Attempts of viral propagation in monkey and chicken cell lines for both viruses were unsuccessful. Also, we found genomes related with viral families that infect invertebrates and plants, suggesting that they might be ingested in the birds’ diet. In sum, these findings shed new light on the diversity of viruses in migratory birds with the notable characterization of a novel astrovirus and calicivirus.
has issue date	2019-04-03(xsd:dateTime)
bibo:doi	10.1038/s41598-019-42110-3
bibo:pmid	30944402
has license	cc-by
sha1sum (hex)	b58211f1b15a1fa27da67930c589e58251c5f51e
schema:url	https://doi.org/10.1038/s41598-019-42110-3
resource representing a document's title	Discovery of novel astrovirus and calicivirus identified in ruddy turnstones in Brazil
has PubMed Central identifier	PMC6447618
has PubMed identifier	30944402
schema:publication	Sci Rep
resource representing a document's body	covid:b58211f1b15a1fa27da67930c589e58251c5f51e#body_text
is schema:about of	named entity 'North' named entity 'viruses' named entity 'identify' named entity 'invertebrates' named entity 'infect' named entity 'Brazil' named entity 'APPROACH' named entity 'CHICKENS' named entity 'ZOONOTIC' named entity 'IDENTIFIED' named entity 'CHARACTERIZATION' named entity 'viruses' named entity 'emergence' named entity 'complete' named entity 'swabs' named entity 'propagation' named entity 'chicken' named entity 'collected' named entity 'viruses' named entity 'high-throughput screening' named entity 'chicken' named entity 'viruses' named entity 'nephritis' named entity 'light' named entity 'evolution' named entity 'clade' named entity 'Phylogenetic analysis' named entity 'migratory birds' named entity 'astrovirus' named entity 'genome' named entity 'astrovirus' named entity 'genomes' named entity 'viruses' named entity 'Pernambuco' named entity 'viruses' named entity 'Brazil OPEN' named entity '2010' named entity 'monophyletic clade' named entity 'HTS' named entity 'Germany' named entity 'Gallus gallus' named entity 'helicase' named entity 'genome' named entity 'capsid protein' named entity 'Phylogenetic analysis' named entity 'ORF2' named entity 'Astroviridae' named entity 'RNA-dependent RNA polymerase' named entity 'cDNA' named entity 'virus' named entity 'RCTV' named entity 'contig' named entity 'gel electrophoresis' named entity 'Applied Biosystems' named entity 'penicillin' named entity 'Dicistroviridae' named entity 'migratory birds' named entity 'host range' named entity 'Vero' named entity 'mammal' named entity 'p-distance' named entity 'bacteria' named entity 'amino acids' named entity 'genome' named entity 'ruddy turnstone' named entity 'Biomatters' named entity 'Illumina HiSeq 2500' named entity 'viral RNA' named entity 'inoculum' named entity 'nature.com' named entity 'astrovirus'

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