About: Full Genomic Characterization of a Saffold Virus Isolated in Peru

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About: Full Genomic Characterization of a Saffold Virus Isolated in Peru Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Full Genomic Characterization of a Saffold Virus Isolated in Peru
Creator	Palacios, Gustavo Wiley, Michael Guevara, Carolina Bausch, Daniel Juarez, Diana Leguia, Mariana Loyola, Steev Prieto, Karla Rios, Jane Silva, Maria Kasper, Matthew
Source	Medline; PMC
abstract	While studying respiratory infections of unknown etiology we detected Saffold virus in an oropharyngeal swab collected from a two-year-old female suffering from diarrhea and respiratory illness. The full viral genome recovered by deep sequencing showed 98% identity to a previously described Saffold strain isolated in Japan. Phylogenetic analysis confirmed the Peruvian Saffold strain belongs to genotype 3 and is most closely related to strains that have circulated in Asia. This is the first documented case report of Saffold virus in Peru and the only complete genomic characterization of a Saffold-3 isolate from the Americas.
has issue date	2015-11-20(xsd:dateTime)
bibo:doi	10.3390/pathogens4040816
bibo:pmid	26610576
has license	cc-by
sha1sum (hex)	ba56c984234f222a42689dc2830c757add96b345
schema:url	https://doi.org/10.3390/pathogens4040816
resource representing a document's title	Full Genomic Characterization of a Saffold Virus Isolated in Peru
has PubMed Central identifier	PMC4693166
has PubMed identifier	26610576
schema:publication	Pathogens
resource representing a document's body	covid:ba56c984234f222a42689dc2830c757add96b345#body_text
is schema:about of	named entity 'CHARACTERIZATION' named entity 'genome' named entity 'GENOMIC' named entity 'PERU' covid:arg/ba56c984234f222a42689dc2830c757add96b345 named entity 'IDENTITY' named entity 'CIRCULATED' named entity 'CHARACTERIZATION' named entity 'RESPIRATORY ILLNESS' named entity 'STRAINS' named entity 'FEMALE' named entity 'PERU' named entity 'PREVIOUSLY' named entity 'CASE REPORT' named entity 'VIRAL GENOME' named entity 'ISOLATED' named entity 'OLD' named entity 'GENOTYPE 3' named entity 'PHYLOGENETIC ANALYSIS' named entity 'OROPHARYNGEAL SWAB' named entity 'DESCRIBED' named entity 'STRAIN' named entity 'GENOMIC' named entity 'JAPAN' named entity 'COLLECTED' named entity 'RESPIRATORY INFECTIONS' named entity 'UNKNOWN ETIOLOGY' named entity 'RELATED' named entity 'DOCUMENTED' named entity 'SAFFOLD VIRUS' named entity 'ISOLATED' named entity 'SAFFOLD VIRUS' named entity 'ISOLATE' named entity 'PERUVIAN' named entity 'YEAR' named entity 'AMERICAS' named entity 'SUFFERING' named entity 'COMPLETE' named entity 'HAVE' named entity 'RECOVERED' named entity 'ASIA' named entity 'DEEP SEQUENCING' named entity 'CONFIRMED' named entity 'DIARRHEA' named entity 'DETECTED' named entity 'This' named entity 'diarrhea' named entity 'viral genome' named entity 'oropharyngeal' named entity 'genotype' named entity 'Peru' named entity 'U.S. Government' named entity 'stool sample' named entity 'genome' named entity 'encephalomyocarditis virus' named entity 'genus' named entity 'positive selection' named entity 'pathogens' named entity 'adenovirus' named entity 'institutional review board' named entity 'VP1' named entity 'China' named entity 'Illumina' named entity 'next-generation sequencing' named entity 'Gamma Distributed' named entity 'Thera' named entity 'Thermo Fisher' named entity 'genomic sequences' named entity 'work unit' named entity 'Peru' named entity 'PCR'

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