About: Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds

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About: Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds
Creator	Canuti, Marta Ojkic, Davor Kroyer, Ashley Lang, Andrew Robertson, Gregory Whitney, Hugh
topic	covid:c4a909da9b4ab2d9a0a9f4305e1cdc4bc66f9d03#this
Source	Medline; PMC
abstract	Wild birds are recognized viral reservoirs but our understanding about avian viral diversity is limited. We describe here three novel RNA viruses that we identified in oropharyngeal/cloacal swabs collected from wild birds. The complete genome of a novel gull metapneumovirus (GuMPV B29) was determined. Phylogenetic analyses indicated that this virus could represent a novel avian metapneumovirus (AMPV) sub-group, intermediate between AMPV-C and the subgroup of the other AMPVs. This virus was detected in an American herring (1/24, 4.2%) and great black-backed (4/26, 15.4%) gulls. A novel gull coronavirus (GuCoV B29) was detected in great black-backed (3/26, 11.5%) and American herring (2/24, 8.3%) gulls. Phylogenetic analyses of GuCoV B29 suggested that this virus could represent a novel species within the genus Gammacoronavirus, close to other recently identified potential novel avian coronaviral species. One GuMPV–GuCoV co-infection was detected. A novel duck calicivirus (DuCV-2 B6) was identified in mallards (2/5, 40%) and American black ducks (7/26, 26.9%). This virus, of which we identified two different types, was fully sequenced and was genetically closest to other caliciviruses identified in Anatidae, but more distant to other caliciviruses from birds in the genus Anas. These discoveries increase our knowledge about avian virus diversity and host distributions.
has issue date	2019-08-21(xsd:dateTime)
bibo:doi	10.3390/v11090768
bibo:pmid	31438486
has license	cc-by
sha1sum (hex)	c4a909da9b4ab2d9a0a9f4305e1cdc4bc66f9d03
schema:url	https://doi.org/10.3390/v11090768
resource representing a document's title	Discovery and Characterization of Novel RNA Viruses in Aquatic North American Wild Birds
has PubMed Central identifier	PMC6784231
has PubMed identifier	31438486
schema:publication	Viruses
resource representing a document's body	covid:c4a909da9b4ab2d9a0a9f4305e1cdc4bc66f9d03#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/c4a909da9b4ab2d9a0a9f4305e1cdc4bc66f9d03
is schema:about of	named entity 'WILD' named entity 'great' named entity 'virus' named entity 'American' named entity 'gulls' named entity 'close' named entity 'NORTH AMERICAN' named entity '282' named entity 'TYPES' named entity 'DUCKS' named entity 'CLOSEST' named entity '40%' named entity 'KNOWLEDGE' named entity 'GULL CORONAVIRUS' named entity 'GULLS' named entity 'B29' named entity 'SWABS' named entity 'GROUP' named entity 'DUCK CALICIVIRUS' named entity 'DIFFERENT' named entity 'BIRDS' named entity 'RESERVOIRS' named entity 'GENUS ANAS' named entity 'SPECIES' named entity 'COULD REPRESENT' named entity 'DISTANT' named entity 'HERRING' named entity 'GULL' named entity 'BUT' named entity 'INCREASE' named entity 'DISTRIBUTIONS' named entity 'LIMITED' named entity 'AMERICAN' named entity 'HERE' named entity 'BLACK' named entity 'IDENTIFIED' named entity 'AMERICAN BLACK' named entity 'COMPLETE' named entity 'SUBGROUP' named entity 'HOST' named entity 'DESCRIBE' named entity 'WILD' named entity 'CHARACTERIZATION' named entity 'DETERMINED' named entity 'COLLECTED' named entity 'RECENTLY' named entity 'DIVERSITY' named entity '287' named entity 'OUR' named entity 'GREAT' named entity 'UNDERSTANDING' named entity '4.2' named entity '15.4' named entity 'POTENTIAL' named entity 'AVIAN VIRUS' named entity 'GENUS GAMMACORONAVIRUS' named entity 'RNA VIRUSES' named entity 'DISCOVERY' named entity 'NOVEL' named entity 'RNA VIRUSES' named entity 'CALICIVIRUSES' named entity 'AVIAN' named entity 'SUB-' named entity 'OROPHARYNGEAL' named entity 'VIRAL' named entity 'INTERMEDIATE' named entity 'DETECTED' named entity 'AVIAN METAPNEUMOVIRUS' named entity 'ABOUT' named entity 'INDICATED' named entity '283' named entity '11.5' named entity 'METAPNEUMOVIRUS' named entity 'ANATIDAE'

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