About: COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data

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About: COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
title	COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data
Creator	Du, Jiang Akram, Javed Adnan, Atif Batool, Zunaira Rakha, Allah Rasheed,
topic	covid:c7145508d19efcefc1ce944c0a3ba5c82c74dc8f#this
source	BioRxiv
abstract	COVID-19 is a newly communicable disease with a catastrophe outbreak that affects all over the world. We retrieved about 8,781 nucleotide fragments and complete genomes of SARS-CoV-2 reported from sixty-four countries. The CoV-2 reference genome was obtained from the National Genomics Data Center (NGDC), GISAID, and NCBI Genbank. All the sequences were aligned against reference genomes using Clustal Omega and variants were called using in-house built Python script. We intend to establish a user-friendly online resource to visualize the variants in the viral genome along with the Primer Infopedia. After analyzing and filtering the data globally, it was made available to the public. The detail of data available to the public includes mutations from 5688 SARS-CoV-2 sequences curated from 91 regions. This database incorporated 39920 mutations over 3990 unique positions. According to the translational impact, these mutations include 11829 synonymous mutations including 681 synonymous frameshifts and 21701 nonsynonymous mutations including 10 nonsynonymous frameshifts. Development of SARS-CoV-2 mutation genome browsers is a fundamental step obliging towards the virus surveillance, viral detection, and development of vaccine and therapeutic drugs. The SARS-COV-2 mutation browser is available at http://covid-19.dnageography.com.
has issue date	2020-06-11(xsd:dateTime)
bibo:doi	10.1101/2020.06.10.145292
has license	biorxiv
sha1sum (hex)	c7145508d19efcefc1ce944c0a3ba5c82c74dc8f
schema:url	https://doi.org/10.1101/2020.06.10.145292
resource representing a document's title	COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data
schema:publication	bioRxiv
resource representing a document's body	covid:c7145508d19efcefc1ce944c0a3ba5c82c74dc8f#body_text
is http://vocab.deri.ie/void#inDataset of	https://covidontheweb.inria.fr:4443/about/id/http/ns.inria.fr/covid19/c7145508d19efcefc1ce944c0a3ba5c82c74dc8f
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