About: Viral metagenomics reveals the presence of highly divergent quaranjavirus in Rhipicephalus ticks from Mozambique

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About: Viral metagenomics reveals the presence of highly divergent quaranjavirus in Rhipicephalus ticks from Mozambique Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

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type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Viral metagenomics reveals the presence of highly divergent quaranjavirus in Rhipicephalus ticks from Mozambique
Creator	Berg, Mikael Blomström, Anne-Lie Cholleti, Harindranath Fafetine, Jose Falk, Kerstin Hayer, Juliette Chanisso Mulandane, Fernando
Source	Medline; PMC
abstract	Background: Ticks are primary vectors for many well-known disease-causing agents that affect human and animal populations globally such as tick-borne encephalitis, Crimean-Congo hemorrhagic fever and African swine fever. In this study, viral metagenomics was used to identify what viruses are present in Rhipicephalus spp. ticks collected in the Zambezi Valley of Mozambique. Methods: The RNA was amplified with sequence-independent single primer amplification (SISPA) and high-throughput sequencing was performed on the Ion Torrent platform. The generated sequences were subjected to quality check and classfied by BLAST. CodonCode aligner and SeqMan were used to assemble the sequences. Results: The majority of viral sequences showed closest sequence identity to the Orthomyxoviridae family, although viruses similar to the Parvoviridae and Coronaviridae were also identified. Nearly complete sequences of five orthomyxoviral segments (HA, NP, PB1, PB2, and PA) were obtained and these showed an amino acid identity of 32–52% to known quaranjaviruses. The sequences were most closely related to the Wellfleet Bay virus, detected and isolated from common eider during a mortality event in the USA. Conclusions: In summary, this study has identified a highly divergent virus with in the Orthomyxoviridae family associated with Rhipicephalus ticks from Mozambique. Further genetic and biological studies are needed in order to investigate potential pathogenesis of the identified orthomyxovirus.
has issue date	2018-05-28(xsd:dateTime)
bibo:doi	10.1080/20008686.2018.1478585
bibo:pmid	29868166
has license	cc-by-nc
sha1sum (hex)	cdfa3f7c065622bfb2c811f71fc0dbae5b1a4d3d
schema:url	https://doi.org/10.1080/20008686.2018.1478585
resource representing a document's title	Viral metagenomics reveals the presence of highly divergent quaranjavirus in Rhipicephalus ticks from Mozambique
has PubMed Central identifier	PMC5974704
has PubMed identifier	29868166
schema:publication	Infect Ecol Epidemiol
resource representing a document's body	covid:cdfa3f7c065622bfb2c811f71fc0dbae5b1a4d3d#body_text
is schema:about of	named entity 'potential' named entity 'pathogenesis' named entity 'sequences' named entity 'amplified' named entity 'Mozambique' named entity 'ticks' named entity 'Further' named entity 'sequence identity' named entity 'ticks' named entity 'event' named entity 'viruses' named entity 'single' named entity 'order' named entity 'Ion Torrent' named entity 'orthomyxovirus' named entity 'affect' named entity 'Methods' named entity 'sequences' named entity 'agents' named entity 'Orthomyxoviridae' named entity 'detected' named entity 'identity' named entity 'swine fever' named entity 'divergent' named entity 'virus' named entity 'viruses' named entity 'spp' named entity 'Rhipicephalus' named entity 'vectors' named entity 'orthomyxovirus' named entity 'Wellfleet Bay' named entity 'Thogotovirus' named entity 'amino acid' named entity 'genus' named entity 'bacteria' named entity 'RNA' named entity 'tick-borne disease' named entity 'metagenome' named entity 'viruses' named entity 'primers' named entity 'Qiagen' named entity 'BLASTx' named entity 'Quaranfil virus' named entity 'Influenza' named entity 'mosquitoes' named entity 'tick' named entity 'Cherax quadricarinatus' named entity 'viral pathogens' named entity 'TRIzol' named entity 'yellow fever virus' named entity 'Ehrlichia' named entity 'virus' named entity 'viruses' named entity 'Parvoviruses' named entity 'microbiota' named entity 'Qiagen' named entity 'SRA' named entity 'NCBI' named entity 'protozoans' named entity 'MSA' named entity 'symbiont' named entity 'viruses' named entity 'genomes' named entity 'Wad Medani' named entity 'virus' named entity 'bacteria' named entity 'RNA' named entity 'PCR' named entity 'Polymerase' named entity 'genus' named entity 'Ticks' named entity 'Mozambique' named entity 'Plasmodium' named entity 'Qiagen' named entity '3′ UTR'

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