About: A Brief Review: The Z-curve Theory and its Application in Genome Analysis

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An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	A Brief Review: The Z-curve Theory and its Application in Genome Analysis
Creator	Zhang, Chun-Ting Zhang, Ren
Source	Medline; PMC
abstract	In theoretical physics, there exist two basic mathematical approaches, algebraic and geometrical methods, which, in most cases, are complementary. In the area of genome sequence analysis, however, algebraic approaches have been widely used, while geometrical approaches have been less explored for a long time. The Z-curve theory is a geometrical approach to genome analysis. The Z-curve is a three-dimensional curve that represents a given DNA sequence in the sense that each can be uniquely reconstructed given the other. The Z-curve, therefore, contains all the information that the corresponding DNA sequence carries. The analysis of a DNA sequence can then be performed through studying the corresponding Z-curve. The Z-curve method has found applications in a wide range of areas in the past two decades, including the identifications of protein-coding genes, replication origins, horizontally-transferred genomic islands, promoters, translational start sides and isochores, as well as studies on phylogenetics, genome visualization and comparative genomics. Here, we review the progress of Z-curve studies from aspects of both theory and applications in genome analysis.
has issue date	2014-04-01(xsd:dateTime)
bibo:doi	10.2174/1389202915999140328162433
bibo:pmid	24822026
has license	cc-by-nc
sha1sum (hex)	d0c4236f95ba2b3d5cdc71fde524b26262f05dd3
schema:url	https://doi.org/10.2174/1389202915999140328162433
resource representing a document's title	A Brief Review: The Z-curve Theory and its Application in Genome Analysis
has PubMed Central identifier	PMC4009844
has PubMed identifier	24822026
schema:publication	Curr Genomics
resource representing a document's body	covid:d0c4236f95ba2b3d5cdc71fde524b26262f05dd3#body_text
is schema:about of	named entity 'PERFORMED' named entity 'PROTEIN-CODING' named entity 'GENOMIC ISLANDS' named entity 'CONTAINS' named entity 'SENSE' named entity 'LONG' named entity 'APPLICATIONS' named entity 'CURVE' named entity 'REPLICATION ORIGINS' named entity 'CARRIES' named entity 'RECONSTRUCTED' named entity 'PROGRESS' named entity 'APPROACH' named entity 'GENES' named entity 'GENOME' named entity 'INCLUDING' named entity 'SEQUENCE ANALYSIS' named entity 'REVIEW' named entity 'EXIST' named entity 'COMPARATIVE GENOMICS' named entity 'GENOME ANALYSIS' named entity 'CURVE' named entity 'ORDERS' named entity 'VISUALIZATION' named entity 'THEORY' named entity 'ITS' named entity 'SEND' named entity 'THEORETICAL' named entity 'HERE' named entity 'METHOD' named entity 'FOUND' named entity 'ANALYSIS' named entity 'MATHEMATICAL' named entity 'AREAS' named entity 'THREE-DIMENSIONAL' named entity 'REVIEW' named entity 'BRIEF' named entity 'NET' named entity 'THEORY' named entity 'STUDIES' named entity 'A DNA' named entity 'TRANSFERRED' named entity 'PHYLOGENETICS' named entity 'INFORMATION' named entity 'IS A' named entity 'DNA SEQUENCE' named entity 'WIDE' named entity 'GENOME SEQUENCE' named entity 'AREA' named entity 'ISOCHORES' named entity 'TRANSLATIONAL' named entity 'USED' named entity 'APPROACHES' named entity 'GENOME ANALYSIS' named entity 'BASIC' named entity 'RANGE' named entity 'APPLICATION' named entity 'TIME' named entity 'START' named entity 'CASES' named entity 'GIVEN' named entity 'METHODS' named entity 'PHYSICS' named entity 'PROMOTERS' named entity 'IN THE PAST' named entity 'HAVE' named entity 'genomic islands' named entity 'Z-curve' named entity 'Z-curve' named entity 'Archaea' named entity 'Z-curve' named entity 'Escherichia coli' named entity 'R. palustris' named entity 'HGT' named entity 'DNA sequences' named entity 'gene' named entity 'Z-curve' named entity 'protein' named entity 'nucleotide' named entity 'GC skew'

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