About: Phylogenetic and phylogeographic mapping of the avian coronavirus spike protein-encoding gene in wild and synanthropic birds

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About: Phylogenetic and phylogeographic mapping of the avian coronavirus spike protein-encoding gene in wild and synanthropic birds Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Phylogenetic and phylogeographic mapping of the avian coronavirus spike protein-encoding gene in wild and synanthropic birds
Creator	Salemi, Marco Durães-Carvalho, Ricardo Arns, Clarice Barnabé, Ana Caserta, Leonardo Martini, Matheus Santos, Márcia Simas, Paulo
Source	Elsevier; Medline; PMC
abstract	Abstract The evolution and population dynamics of avian coronaviruses (AvCoVs) remain underexplored. In the present study, in-depth phylogenetic and Bayesian phylogeographic studies were conducted to investigate the evolutionary dynamics of AvCoVs detected in wild and synanthropic birds. A total of 500 samples, including tracheal and cloacal swabs collected from 312 wild birds belonging to 42 species, were analysed using molecular assays. A total of 65 samples (13%) from 22 bird species were positive for AvCoV. Molecular evolution analyses revealed that the sequences from samples collected in Brazil did not cluster with any of the AvCoV S1 gene sequences deposited in the GenBank database. Bayesian framework analysis estimated an AvCoV strain from Sweden (1999) as the most recent common ancestor of the AvCoVs detected in this study. Furthermore, the analysis inferred an increase in the AvCoV dynamic demographic population in different wild and synanthropic bird species, suggesting that birds may be potential new hosts responsible for spreading this virus.
has issue date	2015-04-02(xsd:dateTime)
bibo:doi	10.1016/j.virusres.2015.03.002
bibo:pmid	25771408
has license	els-covid
sha1sum (hex)	d6457fe8c547776b9e1a38f79eef39a8637aa3cb
schema:url	https://doi.org/10.1016/j.virusres.2015.03.002
resource representing a document's title	Phylogenetic and phylogeographic mapping of the avian coronavirus spike protein-encoding gene in wild and synanthropic birds
has PubMed Central identifier	PMC7114359
has PubMed identifier	25771408
schema:publication	Virus Research
resource representing a document's body	covid:d6457fe8c547776b9e1a38f79eef39a8637aa3cb#body_text
is schema:about of	named entity 'AVIAN CORONAVIRUS' named entity 'birds' named entity 'species' named entity 'Bayesian' named entity 'demographic' named entity 'POTENTIAL' named entity 'TO INVESTIGATE' named entity 'USING' named entity 'S1 GENE' named entity 'BELONGING' named entity 'POPULATION' named entity '500' named entity 'SWEDEN' named entity 'ANALYSIS' named entity 'DIFFERENT' named entity 'DEMOGRAPHIC' named entity 'EVOLUTIONARY DYNAMICS' named entity 'SEQUENCES' named entity 'INCREASE' named entity '312' named entity 'SPIKE PROTEIN' named entity 'GENE' named entity 'VIRUS' named entity 'BIRD' named entity 'EVOLUTION' named entity 'MOLECULAR' named entity 'ANCESTOR' named entity 'PRESENT' named entity 'SPECIES' named entity 'SPREADING' named entity 'DEPTH' named entity 'DETECTED' named entity 'WILD' named entity 'INCLUDING' named entity 'MAY BE' named entity 'DYNAMIC' named entity 'SAMPLES' named entity 'COMMON' named entity 'STUDIES' named entity 'STUDY' named entity 'DATABASE' named entity 'MOST RECENT' named entity 'STRAIN' named entity 'HOSTS' named entity 'ESTIMATED' named entity 'BIRDS' named entity 'WILD' named entity 'ENCODING' named entity 'TOTAL' named entity 'CLUSTER' named entity 'INFERRED' named entity 'DID' named entity 'COLLECTED' named entity 'GENBANK' named entity 'SWABS' named entity 'POSITIVE FOR' named entity 'BIRDS' named entity 'DEPOSITED' named entity 'RESPONSIBLE' named entity 'MAPPING' named entity 'CLOACAL' named entity 'REVEALED' named entity 'POPULATION DYNAMICS' named entity 'BRAZIL' named entity 'AVIAN CORONAVIRUSES' named entity 'NEW' named entity 'MOLECULAR EVOLUTION' named entity 'TRACHEAL' covid:arg/d6457fe8c547776b9e1a38f79eef39a8637aa3cb named entity 'evolutionary dynamics' named entity 'studies' named entity 'remain' named entity 'collected' named entity 'cluster'

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