About: Epidemiology of Deltacoronaviruses (δ-CoV) and Gammacoronaviruses (γ-CoV) in Wild Birds in the United States

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About: Epidemiology of Deltacoronaviruses (δ-CoV) and Gammacoronaviruses (γ-CoV) in Wild Birds in the United States Goto Sponge NotDistinct Permalink

An Entity of Type : schema:ScholarlyArticle, within Data Space : wasabi.inria.fr associated with source document(s)

Attributes	Values
type	Academic Article research paper schema:ScholarlyArticle
isDefinedBy	Covid-on-the-Web dataset
has title	Epidemiology of Deltacoronaviruses (δ-CoV) and Gammacoronaviruses (γ-CoV) in Wild Birds in the United States
Creator	Marthaler, Douglas Vlasova, Anastasia Miller, Lauren Saif, Linda Bowman, Andrew Paim, Francine Feehan, Brandi
Source	Medline; PMC
abstract	Porcine deltacoronavirus (δ-CoV) is the object of extensive research in several countries including the United States. In contrast, the epidemiology of δ-CoVs in wild birds in the US is largely unknown. Our aim was to comparatively assess the prevalence of δ- and γ-CoVs in wild migratory terrestrial and aquatic birds in Arkansas, Illinois, Indiana, Maryland, Mississippi, Missouri, Ohio, Tennessee and Wisconsin. A total of 1236 cloacal/fecal swabs collected during the period 2015–2018 were tested for γ- and δ-CoVs using genus-specific reverse transcription-PCR assays. A total of 61 (4.99%) samples were γ-CoV positive, with up to 29 positive samples per state. In contrast, only 14 samples were positive for δ-CoV (1.14%) with only 1–4 originating from the same state. Thus, unlike previous reports from Asia, γ-CoVs are more prevalent than δ-CoVs in the US, suggesting that δ-CoVs may spread in birds with lower efficiency. This may indicate δ-CoV emerging status and incomplete adaptation to new host species limiting its spread. Phylogenetic analysis of the partial N gene revealed that the newly identified δ-CoV strains were most closely related to the HKU20 (wigeon) strain. Further studies are necessary to investigate the role of aquatic bird δ-CoVs in the epidemiology of δ-CoVs in swine and terrestrial birds.
has issue date	2019-09-26(xsd:dateTime)
bibo:doi	10.3390/v11100897
bibo:pmid	31561462
has license	cc-by
sha1sum (hex)	dcd7ba50d2dd32e9237d69e920ce1c4fa91f4df9
schema:url	https://doi.org/10.3390/v11100897
resource representing a document's title	Epidemiology of Deltacoronaviruses (δ-CoV) and Gammacoronaviruses (γ-CoV) in Wild Birds in the United States
has PubMed Central identifier	PMC6832366
has PubMed identifier	31561462
schema:publication	Viruses
resource representing a document's body	covid:dcd7ba50d2dd32e9237d69e920ce1c4fa91f4df9#body_text
is schema:about of	named entity 'collected' named entity 'gene' named entity 'Missouri' named entity 'positive' named entity 'United States' named entity 'WILD' covid:arg/dcd7ba50d2dd32e9237d69e920ce1c4fa91f4df9 named entity 'BIRDS' named entity 'RELATED' named entity 'ILLINOIS' named entity 'PHYLOGENETIC ANALYSIS' named entity 'N GENE' named entity 'PREVALENCE' named entity 'STRAINS' named entity 'PREVIOUS REPORTS' named entity 'CONTRAST' named entity 'PREVALENT' named entity 'LOWER' named entity 'INDIANA' named entity 'COVS' named entity 'MIGRATORY' named entity 'PARTIAL' named entity '2018' named entity 'ASSESS' named entity 'NEWLY' named entity 'ARKANSAS' named entity 'REVEALED' named entity 'AQUATIC' named entity 'UNITED STATES' named entity 'EXTENSIVE' named entity 'PORCINE DELTACORONAVIRUS' named entity 'MISSOURI' named entity 'CLOACAL' named entity 'USING' named entity 'TESTED FOR' named entity 'LIMITING' named entity 'SAMPLES' named entity 'SWINE' named entity 'STUDIES' named entity 'SPREAD' named entity 'ITS' named entity 'TOTAL' named entity 'NECESSARY' named entity 'NEW' named entity 'WILD' named entity 'EFFICIENCY' named entity 'WISCONSIN' named entity 'BIRD' named entity 'IDENTIFIED' named entity 'STATE' named entity 'AIM' named entity 'OUR' named entity 'OHIO' named entity 'ADAPTATION' named entity 'GENUS' named entity 'UP TO' named entity 'POSITIVE' named entity '2015' named entity 'EPIDEMIOLOGY' named entity 'INCOMPLETE' named entity 'SWABS' named entity 'OBJECT' named entity 'SPECIFIC' named entity 'BIRDS' named entity 'MISSISSIPPI' named entity 'COLLECTED' named entity 'HOST SPECIES' named entity '2019' named entity 'STATUS' named entity 'PCR' named entity 'TERRESTRIAL' named entity 'TENNESSEE' named entity 'RESEARCH' named entity 'ROLE' named entity 'LARGELY'

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